RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CNKSR3Q6P9H4 555 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MICU2Q8IYU8 434 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 FAM9CQ8IZT9 166 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 NAT16Q8N8M0 369 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 DIS3LQ8TF46 1054 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 NTAN1Q96AB6 310 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 AHCYL2Q96HN2 611 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SERAC1Q96JX3 654 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SLC25A23Q9BV35 468 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 AASDHPPTQ9NRN7 309 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 CACNA1SQ13698 1873 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TJP1Q07157 1748 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 STRCP1A6NGW2 1772 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 C2orf71A6NGG8 1288 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 C9IYK1 514 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 NMBRP28336 390 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 HTR7P34969 479 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 GJA9P57773 515 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 GPM6BQ13491 265 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SAMD4BQ5PRF9 694 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 NCBP2-AS2Q69YL0 99 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 CEP68Q76N32 757 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TRAPPC5Q8IUR0 188 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ZCCHC7Q8N3Z6 543 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 OSCP1Q8WVF1 389 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 BORCS5Q969J3 196 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SMOQ99835 787 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 EBF3Q9H4W6 596 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 KLQ9UEF7 1012 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 PRKAG3Q9UGI9 489 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 VPS51Q9UID3 782 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TMEM114B3SHH9 223 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 H3BMM5 538 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 APODP05090 189 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ZNF132P52740 706 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 GHRHRQ02643 423 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 CBX3Q13185 183 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SEMA5AQ13591 1074 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 HNRNPDQ14103 355 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 FAM151BQ6UXP7 276 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ZNF438Q7Z4V0 828 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TMEM130Q8N3G9 435 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 WDTC1Q8N5D0 677 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TUBGCP5Q96RT8 1024 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 C9orf16Q9BUW7 83 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MRPS17Q9Y2R5 130 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 PCDHGC4Q9Y5F7 938 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MYH8P13535 1937 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 PIRO00625 290 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 NDST3O95803 873 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 DLGAP3O95886 979 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 LBPP18428 481 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 CDH5P33151 784 aaPredicted RBP11.02□□□□□ -0.64
HDAC6-228ENST00000486227 GAD2Q05329 585 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 SULT2A1Q06520 285 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 NEDD8Q15843 81 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 CMPK2Q5EBM0 449 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 HORMAD1Q86X24 394 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 KREMEN2Q8NCW0 462 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 PEBP4Q96S96 227 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 KIAA1522Q9P206 1035 aaPredicted RBP11.02□□□□□ -0.64
HDAC6-228ENST00000486227 ZNF180Q9UJW8 692 aa11.02□□□□□ -0.64
HDAC6-228ENST00000486227 DNAJC25-GNG10A0A024R161 153 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 RGSL1A5PLK6 1076 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 PEX1O43933 1283 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 UGT1A9O60656 530 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 TRAF2Q12933 501 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 FRG1Q14331 258 aaKnown RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SATL1Q86VE3 508 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 CAMK1DQ8IU85 385 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 DHRSXQ8N5I4 330 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 ZSCAN18Q8TBC5 510 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 KCTD13Q8WZ19 329 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 NXNL1Q96CM4 212 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 FAM120BQ96EK7 910 aaKnown RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 UGT1A7Q9HAW7 530 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 UGT1A10Q9HAW8 530 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 UGT1A8Q9HAW9 530 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 HMG20AQ9NP66 347 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 IGSF9Q9P2J2 1179 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 FETUBQ9UGM5 382 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 TNPO3Q9Y5L0 923 aaKnown RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 RAI2Q9Y5P3 530 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 ZFP37Q9Y6Q3 630 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SLC38A8A6NNN8 435 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 H3BNX3 289 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 INPP4BO15327 924 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 DNTTP04053 509 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 C8AP07357 584 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 CES1P23141 567 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 HTR1BP28222 390 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 GJA5P36382 358 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 CHRNA4P43681 627 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 LBX1P52954 281 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 LIMK2P53671 638 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 SOX4Q06945 474 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-228ENST00000486227 IRAK1BP1Q5VVH5 260 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 PPP4R4Q6NUP7 873 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 CCDC103Q8IW40 242 aa11.02□□□□□ -0.65
HDAC6-228ENST00000486227 MPP5Q8N3R9 675 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms