RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TRPM5Q9NZQ8 1165 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 HCSTQ9UBK5 93 aa12.21□□□□□ -0.46
PTPRF-212ENST00000477970 TTC24A2A3L6 582 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 TRIM43BA6NCK2 446 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 GFRA2O00451 464 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ADAM12O43184 909 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 RHOCP08134 193 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ACADVLP49748 655 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ADARP55265 1226 aaKnown RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 UNC50Q53HI1 259 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 OR7D4Q8NG98 312 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 OR52K2Q8NGK3 314 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF461Q8TAF7 563 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 LPGAT1Q92604 370 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 TRIM43Q96BQ3 446 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 CATSPER2Q96P56 530 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ATOH8Q96SQ7 321 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 HERC2P3Q9BVR0 1158 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 GTSE1Q9NYZ3 720 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 C6orf203Q9P0P8 240 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 NEMP2A6NFY4 417 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 H3BNX3 289 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 GJB5O95377 273 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 TIMP1P01033 207 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 PRLP01236 227 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF177Q13360 481 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 GALNT3Q14435 633 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 INO80DQ53TQ3 878 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 IL31Q6EBC2 164 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 HPS6Q86YV9 775 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 HERC6Q8IVU3 1022 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 KBTBD2Q8IY47 623 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 KIAA1191Q96A73 305 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 PTERQ96BW5 349 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 ZNF512Q96ME7 567 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-212ENST00000477970 TRAF6Q9Y4K3 522 aa12.2□□□□□ -0.46
PTPRF-212ENST00000477970 LCHNA4D1U4 455 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 OR51F1A6NGY5 319 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 KLK8O60259 260 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 KERAO60938 352 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 GJB3O75712 270 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PDE5AO76074 875 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SOD2P04179 222 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PIM1P11309 404 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CDC25CP30307 473 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CORO1AP31146 461 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 ALDH7A1P49419 539 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CLCN4P51793 760 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 EPHB1P54762 984 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 STX5Q13190 355 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 UGT3A2Q3SY77 523 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 FAM217AQ8IXS0 508 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 GPR65Q8IYL9 337 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CFAP52Q8N1V2 620 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 OR13C4Q8NGS5 318 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CLSTN3Q9BQT9 956 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 ALG9Q9H6U8 611 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CYP4F11Q9HBI6 524 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SCUBE2Q9NQ36 999 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PRKAG2Q9UGJ0 569 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 OAS3Q9Y6K5 1087 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CXorf51AA0A1B0GTR3 108 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 C2orf81A6NN90 581 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 TMEM233B4DJY2 109 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 NT5C1B-RDH14C9J2C7 533 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 KLKB1P03952 638 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CAPNS1P04632 268 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 HNRNPLP14866 589 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 OR1D2P34982 312 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PPM1LQ5SGD2 360 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 IRAK1BP1Q5VVH5 260 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CXorf57Q6NSI4 855 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 LARP4Q71RC2 724 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 RAB44Q7Z6P3 723 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PDSS2Q86YH6 399 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 DENND1CQ8IV53 801 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 CLYBLQ8N0X4 340 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SHKBP1Q8TBC3 707 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 GATA6Q92908 595 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 RCN3Q96D15 328 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SGF29Q96ES7 293 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 AGO1Q9UL18 857 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 UBFD1O14562 309 aaKnown RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PFDN6O15212 129 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SEC24AO95486 1093 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 TRIM68Q6AZZ1 485 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 NXNQ6DKJ4 435 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 C8orf82Q6P1X6 216 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-212ENST00000477970 RNF111Q6ZNA4 994 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 NSMCE3Q96MG7 304 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 ADGRE3Q9BY15 652 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SHCBP1LQ9BZQ2 653 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 WDR41Q9HAD4 459 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 PSMD13Q9UNM6 376 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 SPO11Q9Y5K1 396 aa12.19□□□□□ -0.46
PTPRF-212ENST00000477970 AIM2O14862 343 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 UBDO15205 165 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 ZMPSTE24O75844 475 aa12.18□□□□□ -0.46
PTPRF-212ENST00000477970 MTHFD2P13995 350 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms