RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PPP1R3GB7ZBB8 358 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 K7ELQ4 463 aaPredicted RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 HAX1O00165 279 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 KRIT1O00522 736 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 FANCGO15287 622 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PROM1O43490 865 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 CLDN11O75508 207 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 CLDN14O95500 239 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TRUB2O95900 331 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 APOEP02649 317 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 RHOCP08134 193 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 CCNYL3P0C7X3 344 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 AGAP20933 346 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 MST1P26927 711 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ADSLP30566 484 aaPredicted RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 ADCY8P40145 1251 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 GNPDA1P46926 289 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 POLD2P49005 469 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 VAMP7P51809 220 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 VAV2P52735 878 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 AP3M2P53677 418 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 KRT83P78385 493 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PPP3CAQ08209 521 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 RALGDSQ12967 914 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 NFATC2Q13469 925 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 RAPGEF1Q13905 1077 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 IL11RAQ14626 422 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 KCNAB1Q14722 419 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TAF5Q15542 800 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ASIC2Q16515 512 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 LONRF1Q17RB8 773 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.77□□□□□ -1.65
USP4-209ENST00000475873 RABGAP1LQ5R372 815 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TMCO4Q5TGY1 634 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PRAMEF17Q5VTA0 474 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 OTUD1Q5VV17 481 aaPredicted RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 FAM198BQ6UWH4 519 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 CERS6Q6ZMG9 384 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 MED25Q71SY5 747 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TFAP2DQ7Z6R9 452 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ENDOVQ8N8Q3 282 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 OR10G6Q8NH81 332 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ATL2Q8NHH9 583 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 SEC14L1Q92503 715 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ARHGEF26Q96DR7 871 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 AHCYL2Q96HN2 611 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 C9orf72Q96LT7 481 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 NT5C1BQ96P26 610 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 SLC38A3Q99624 504 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 WDR77Q9BQA1 342 aaPredicted RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 TRIM56Q9BRZ2 755 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 GSDMCQ9BYG8 508 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 FRMD8Q9BZ67 464 aaPredicted RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 CEP44Q9C0F1 390 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 MIS12Q9H081 205 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ZMYND15Q9H091 742 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TKTL2Q9H0I9 626 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PCDH12Q9NPG4 1184 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 OLAHQ9NV23 265 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 DMAC2Q9NW81 257 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TRNAU1APQ9NX07 287 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 MPP6Q9NZW5 540 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 SUCOQ9UBS9 1254 aaKnown RBP4.77□□□□□ -1.65
USP4-209ENST00000475873 STK17AQ9UEE5 414 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 SERTAD1Q9UHV2 236 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ST6GALNAC2Q9UJ37 374 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 MOSPD1Q9UJG1 213 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TINAGQ9UJW2 476 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 TCFL5Q9UL49 500 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 SUFUQ9UMX1 484 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PLEKHA6Q9Y2H5 1048 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 ANKRD12Q6UB98 2062 aa4.77□□□□□ -1.65
USP4-209ENST00000475873 PRKDCP78527 4128 aaKnown RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 CACNB4O00305 520 aaPredicted RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 INSIG1O15503 277 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 CREB3O43889 395 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 EXOC3O60645 756 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 RECQL5O94762 991 aaPredicted RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 REC8O95072 547 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ADCY5O95622 1261 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 F12P00748 615 aaPredicted RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 HOXC4P09017 264 aaPredicted RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 SETSIPP0DME0 302 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 FOLR1P15328 257 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 HOXC12P31275 282 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 LONP1P36776 959 aaKnown RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 ACVRL1P37023 503 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 MMP12P39900 470 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ACTR1BP42025 376 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 MAPK9P45984 424 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 GCLMP48507 274 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 LIG3P49916 1009 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 CDH4P55283 916 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 FOXL2P58012 376 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ACTR1AP61163 376 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 PPP1CAP62136 330 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 RPS15P62841 145 aaKnown RBP4.76□□□□□ -1.65
USP4-209ENST00000475873 NUCB2P80303 420 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 FOLH1Q04609 750 aa4.76□□□□□ -1.65
USP4-209ENST00000475873 ILF3Q12906 894 aaKnown RBP eCLIP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms