RNA–Protein interactions for RNA: ENST00000470083.5

LSM2-209, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM2, Length 641 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-209	ENST00000470083	LUZP4	Q9P127	313 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	LHX3	Q9UBR4	397 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	OR12D3	Q9UGF7	316 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	NEU3	Q9UQ49	428 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	ZNF451	Q9Y4E5	1061 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	PCDHGB7	Q9Y5F8	929 aa		11.97	□□□□□ -0.49
LSM2-209	ENST00000470083	FAM237A	A0A1B0GTK4	181 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	TRIM49B	A6NDI0	452 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	BECN2	A8MW95	431 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	DPM1	O60762	260 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	ANKRD34C	P0C6C1	535 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	NFKBIA	P25963	317 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	SCNN1A	P37088	669 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	GARS	P41250	739 aa	Known RBP	11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	ACTR1B	P42025	376 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	ACTR1A	P61163	376 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	DNM1	Q05193	864 aa	Known RBP	11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	DNASE1L3	Q13609	305 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	AFMID	Q63HM1	303 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	CPZ	Q66K79	652 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	KRBA2	Q6ZNG9	492 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	SFRP1	Q8N474	314 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	SLC37A2	Q8TED4	501 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	PTCD2	Q8WV60	388 aa	Known RBP	11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	SEC14L1	Q92503	715 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	NCSTN	Q92542	709 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	PNPLA2	Q96AD5	504 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	CEP63	Q96MT8	703 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	TEX101	Q9BY14	249 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	POLE	Q07864	2286 aa		11.96	□□□□□ -0.49
LSM2-209	ENST00000470083	C21orf140	B9A014	251 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	BUB1B	O60566	1050 aa	Predicted RBP	11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	F13A1	P00488	732 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	IVL	P07476	585 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	FLT3	P36888	993 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	NDST2	P52849	883 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	FOXM1	Q08050	763 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	CHRNA6	Q15825	494 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	CCDC40	Q4G0X9	1142 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	SLC6A19	Q695T7	634 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	ZNF354C	Q86Y25	554 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	HPS6	Q86YV9	775 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	CAMK1D	Q8IU85	385 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	MCEMP1	Q8IX19	187 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	C19orf60	Q96EN9	201 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	TUBGCP5	Q96RT8	1024 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	ACTL8	Q9H568	366 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	ACSS2	Q9NR19	701 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	KLHL3	Q9UH77	587 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	SLC17A4	Q9Y2C5	497 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	DOCK4	Q8N1I0	1966 aa		11.95	□□□□□ -0.5
LSM2-209	ENST00000470083	ABCA2	Q9BZC7	2435 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	GOLGA6L3	A6NEY3	463 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ANKUB1	A6NFN9	424 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	FAM72C	H0Y354	149 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	KRT86	O43790	486 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	KIAA0754	O94854	1291 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	LRIG2	O94898	1065 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	NDUFA10	O95299	355 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	MAP3K6	O95382	1288 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CCNYL3	P0C7X3	344 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ZSCAN22	P10073	491 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	USP8	P40818	1118 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CCL11	P51671	97 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	EPHA4	P54764	986 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CDK3	Q00526	305 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	HHEX	Q03014	270 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CHAF1B	Q13112	559 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	IL11RA	Q14626	422 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ACOX1	Q15067	660 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CYTH1	Q15438	398 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	UGT8	Q16880	541 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ZXDC	Q2QGD7	858 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	FAM72A	Q5TYM5	149 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	FAM72D	Q6L9T8	149 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	TRNP1	Q6NT89	227 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	DPPA4	Q7L190	304 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	FAM72B	Q86X60	149 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ECHDC3	Q96DC8	303 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	TBC1D31	Q96DN5	1066 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	NUS1	Q96E22	293 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	RNF31	Q96EP0	1072 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	SCARF2	Q96GP6	870 aa	Predicted RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	COQ10A	Q96MF6	247 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	CFAP57	Q96MR6	1250 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	OR2M4	Q96R27	311 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	MFRP	Q9BY79	579 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	KLC2	Q9H0B6	622 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	ING2	Q9H160	280 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	NOL6	Q9H6R4	1146 aa	Known RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	RUBCNL	Q9H714	662 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	SARS2	Q9NP81	518 aa	Known RBP	11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	RMND1	Q9NWS8	449 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	PADI1	Q9ULC6	663 aa		11.94	□□□□□ -0.5
LSM2-209	ENST00000470083	MN1	Q10571	1320 aa	Predicted RBP	11.93	□□□□□ -0.5
LSM2-209	ENST00000470083	CEACAM4	O75871	244 aa		11.93	□□□□□ -0.5
LSM2-209	ENST00000470083	SERPINA4	P29622	427 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms