RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MAP7D2Q96T17 732 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS29-202ENST00000447578 OR10A4Q9H209 315 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 FBRSL1Q9HCM7 1045 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 CCDC177Q9NQR7 707 aaPredicted RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 C20orf141Q9NUB4 165 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS29-202ENST00000447578 TMEM248Q9NWD8 314 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 MIS18AQ9NYP9 233 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SEMA5BQ9P283 1151 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SUCLA2Q9P2R7 463 aaPredicted RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 CDH22Q9UJ99 828 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 INTS6Q9UL03 887 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 MKLN1Q9UL63 735 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 PROCRQ9UNN8 238 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 DTX4Q9Y2E6 619 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 ADAM18Q9Y3Q7 739 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 DIP2AQ14689 1571 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SLIT1O75093 1534 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 CRB1P82279 1406 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 KIAA0232Q92628 1395 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 TOPAZ1Q8N9V7 1692 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 PTPRCP08575 1304 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ARHGAP10A1A4S6 786 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 OR6C68A6NDL8 312 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 C17orf100A8MU93 164 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 BTBD18B2RXH4 712 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 SNAP23O00161 211 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 LIASO43766 372 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 FCGR2AP12318 317 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 TGM2P21980 687 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 TYK2P29597 1187 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 HOXC9P31274 260 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 CDKN2AP42771 156 aaKnown RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 GNAQP50148 359 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ZNF84P51523 738 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 AIMP1Q12904 312 aaKnown RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 MTX1Q13505 466 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 IRF3Q14653 427 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ANXA2RQ3ZCQ2 193 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 GKAP1Q5VSY0 366 aaPredicted RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 MOB3CQ70IA8 216 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 FAM160B2Q86V87 743 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ARHGAP12Q8IWW6 846 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 C16orf71Q8IYS4 520 aaPredicted RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 SCML4Q8N228 414 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 SCAIQ8N9R8 606 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 GABPB2Q8TAK5 448 aaPredicted RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 CELF1Q92879 486 aaKnown RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 SAT2Q96F10 170 aaPredicted RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 SPATA17Q96L03 361 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 POLR1BQ9H9Y6 1135 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 SCPEP1Q9HB40 452 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ENTPD7Q9NQZ7 604 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 SNTG1Q9NSN8 517 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 MRPL15Q9P015 296 aaKnown RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 KIAA1456Q9P272 454 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 UPB1Q9UBR1 384 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 MTMR6Q9Y217 621 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 SIRT4Q9Y6E7 314 aaPredicted RBP4.29□□□□□ -1.72
VPS29-202ENST00000447578 CAPN7Q9Y6W3 813 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 PEAK1Q9H792 1746 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 ANKARQ7Z5J8 1434 aa4.29□□□□□ -1.72
VPS29-202ENST00000447578 MSH6P52701 1360 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 IGSF1Q8N6C5 1336 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TCRBV7S3A2A0A539 114 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TMEM247A6NEH6 219 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 ENTPD3O75355 529 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 OR2C1O95371 312 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 HSPA4LO95757 839 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 IL1AP01583 271 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 HSP90AB1P08238 724 aaKnown RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 TNFRSF1BP20333 461 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 POU1F1P28069 291 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 UBA7P41226 1012 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 LMAN1P49257 510 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 MRPL12P52815 198 aaKnown RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 PSMC6P62333 389 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 UBXN2AP68543 259 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 DMWDQ09019 674 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 NIPAL4Q0D2K0 466 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 STIM1Q13586 685 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 VEPH1Q14D04 833 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TAF11Q15544 211 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 SLC9C1Q4G0N8 1177 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 ARL13AQ5H913 290 aaPredicted RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 GARNL3Q5VVW2 1013 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TSSK4Q6SA08 328 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 DHRS13Q6UX07 377 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 VSTM1Q6UX27 236 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 FAM83HQ6ZRV2 1179 aaPredicted RBP4.28□□□□□ -1.72
VPS29-202ENST00000447578 G2E3Q7L622 706 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 KDELC2Q7Z4H8 507 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 MDGA2Q7Z553 956 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 GPAT4Q86UL3 456 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TICAM1Q8IUC6 712 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 TTC30BQ8N4P2 665 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 POC5Q8NA72 575 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 AVL9Q8NBF6 648 aa4.28□□□□□ -1.72
VPS29-202ENST00000447578 NEK9Q8TD19 979 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms