RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 POTEHQ6S545 545 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 PROSER1Q86XN7 944 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 PPCDCQ96CD2 204 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 INPP4AQ96PE3 977 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-209ENST00000438120 TLE6Q9H808 572 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 E9PAM4 449 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 DRD4P21917 467 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 NDUFAF6Q330K2 333 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 POMZP3Q6PJE2 187 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-209ENST00000438120 PYROXD2Q8N2H3 581 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 EIF1ADQ8N9N8 165 aaKnown RBP17.18■□□□□ 0.34
PTPRF-209ENST00000438120 ZNF398Q8TD17 642 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 KIFC1Q9BW19 673 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 NMUR1Q9HB89 426 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 CLIC5Q9NZA1 410 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 SORCS3Q9UPU3 1222 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 TRAF6Q9Y4K3 522 aa17.18■□□□□ 0.34
PTPRF-209ENST00000438120 QSOX1O00391 747 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ASGR1P07306 291 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 TMPRSS11BQ86T26 416 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 VANGL1Q8TAA9 524 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 BTN2A3PQ96KV6 586 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 LRMDAQ9H2I8 198 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 PRR5-ARHGAP8B1AHC4 643 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 CILPO75339 1184 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 STX11O75558 287 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 SLC7A2P52569 658 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 MANFP55145 182 aaKnown RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ARHGAP8P85298 464 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 PDK3Q15120 406 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 HECTD2Q5U5R9 776 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 BHLHB9Q6PI77 547 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 DENND6AQ8IWF6 608 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ING5Q8WYH8 240 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ITCHQ96J02 903 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 SPATA5L1Q9BVQ7 753 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 PDZD7Q9H5P4 517 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RIMBP3CA6NJZ7 1639 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RIMBP3BA6NNM3 1639 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RIMBP3Q9UFD9 1639 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 GLYATL1P3A0A0U1RQE8 302 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 GRM6O15303 877 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 NOMO1Q15155 1222 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RNASEH2BQ5TBB1 312 aaKnown RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 TSPAN14Q8NG11 270 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RPRD1BQ9NQG5 326 aaKnown RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 PNMA8CA0A1B0GUJ8 204 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 AP3D1O14617 1153 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 SLC22A3O75751 556 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 DSC2Q02487 901 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 TEX44Q53QW1 395 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 DHDDSQ86SQ9 333 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 SLC47A1Q96FL8 570 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 SLC38A2Q96QD8 506 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 LHX5Q9H2C1 402 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ZNF490Q9ULM2 529 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 RAI2Q9Y5P3 530 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ABHD14A-ACY1A0A1B0GW23 586 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 BIRC5O15392 142 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 FSBPO95073 299 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 CD48P09326 243 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 TSHRP16473 764 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 BMP7P18075 431 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ADSLP30566 484 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 MAPKAPK2P49137 400 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 CLK3P49761 638 aaKnown RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 MYBPC1Q00872 1141 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 PPM1JQ5JR12 505 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 LCLAT1Q6UWP7 414 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 OSER1Q9NX31 292 aa17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ZMYND8Q9ULU4 1186 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-209ENST00000438120 ZNF541Q9H0D2 1346 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 C4BPAP04003 597 aaKnown RBP17.16■□□□□ 0.34
PTPRF-209ENST00000438120 NUDT17P0C025 328 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 UGT2B15P54855 530 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 METTL3Q86U44 580 aaKnown RBP17.16■□□□□ 0.34
PTPRF-209ENST00000438120 OR7A2PQ8NGA2 310 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 RDH11Q8TC12 318 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 CD99L2Q8TCZ2 262 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 TIMM22Q9Y584 194 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 DDX3YO15523 660 aaKnown RBP17.16■□□□□ 0.34
PTPRF-209ENST00000438120 B4GALT4O60513 344 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 SSR2P43308 183 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 PMF1Q6P1K2 205 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 CCDC185Q8N715 623 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 TSPAN1O60635 241 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 PCCBP05166 539 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 MMP8P22894 467 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 SF1Q15637 639 aaKnown RBP17.16■□□□□ 0.34
PTPRF-209ENST00000438120 TTC23Q5W5X9 447 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 TRABD2AQ86V40 505 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 SPPL2BQ8TCT7 592 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 APOLD1Q96LR9 279 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 WRAP53Q9BUR4 548 aaKnown RBP17.16■□□□□ 0.34
PTPRF-209ENST00000438120 SLC39A8Q9C0K1 460 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 PTPRJQ12913 1337 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 CLDN11O75508 207 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 ITGA2P17301 1181 aa17.16■□□□□ 0.34
PTPRF-209ENST00000438120 CCNA2P20248 432 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms