RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SNAP91O60641 907 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 ACTR1BP42025 376 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 SLC1A6P48664 564 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 BLKP51451 505 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 ACTR1AP61163 376 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 PTP4A2Q12974 167 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 ABRQ12979 859 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 MPP3Q13368 585 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 GRM3Q14832 879 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 CCDC142Q17RM4 750 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 PYROXD2Q8N2H3 581 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 EFCAB3Q8N7B9 438 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 NKD2Q969F2 451 aaPredicted RBP10.66□□□□□ -0.7
TCOF1-204ENST00000427724 SMOQ99835 787 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 ACE2Q9BYF1 805 aaPredicted RBP10.66□□□□□ -0.7
TCOF1-204ENST00000427724 PREBQ9HCU5 417 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 RAI2Q9Y5P3 530 aa10.66□□□□□ -0.7
TCOF1-204ENST00000427724 TTC28Q96AY4 2481 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 C2orf78A6NCI8 922 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PROCP04070 461 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PRKCGP05129 697 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 CPA3P15088 417 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 GPC1P35052 558 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DCTN2Q13561 401 aaKnown RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 FLOT2Q14254 428 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 HFE2Q6ZVN8 426 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 LRRC49Q8IUZ0 686 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DNAJC1Q96KC8 554 aaKnown RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 CASD1Q96PB1 797 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 FERD3LQ96RJ6 166 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 NAT9Q9BTE0 207 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 HERC2P3Q9BVR0 1158 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 NLNQ9BYT8 704 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 HEBP1Q9NRV9 189 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 THAP1Q9NVV9 213 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ZDHHC7Q9NXF8 308 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 GDAP2Q9NXN4 497 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SIX4Q9UIU6 781 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 WASF2Q9Y6W5 498 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 THSD7AQ9UPZ6 1657 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 UBR2Q8IWV8 1755 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PIRO00625 290 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DCXO43602 365 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 TIMM44O43615 452 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 TM7SF2O76062 418 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 IDSP22304 550 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 WNT3AP56704 352 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 TMEM164Q5U3C3 297 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PDPK2PQ6A1A2 396 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 TTC9BQ8N6N2 239 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 TMCO5AQ8N6Q1 288 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SLCO2A1Q92959 643 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SDCCAG3Q96C92 435 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 HERPUD2Q9BSE4 406 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 MAGEH1Q9H213 219 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SYTL2Q9HCH5 934 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 GSC2O15499 205 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 IRAK2O43187 625 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 FKBP6O75344 327 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ZMPSTE24O75844 475 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ANPEPP15144 967 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 CYP2A7P20853 494 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ASPAP45381 313 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 MGAT5Q09328 741 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ATP1A4Q13733 1029 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 UBAP2LQ14157 1087 aaKnown RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 CSHL1Q14406 222 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 SLC5A9Q2M3M2 681 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PARP15Q460N3 678 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 FBXL22Q6P050 247 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 LRRC8BQ6P9F7 803 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 XYLT1Q86Y38 959 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DRAXINQ8NBI3 349 aaPredicted RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 OR52K1Q8NGK4 314 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DDX1Q92499 740 aaKnown RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 PSMG2Q969U7 264 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 CLPTM1LQ96KA5 538 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 ECSITQ9BQ95 431 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 NUSAP1Q9BXS6 441 aaKnown RBP10.65□□□□□ -0.7
TCOF1-204ENST00000427724 FAM83DQ9H4H8 585 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 KCNK4Q9NYG8 393 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 DCDC2Q9UHG0 476 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 RABGEF1Q9UJ41 708 aa10.65□□□□□ -0.7
TCOF1-204ENST00000427724 COCHO43405 550 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 STMN1P16949 149 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 LPOP22079 712 aaPredicted RBP10.64□□□□□ -0.71
TCOF1-204ENST00000427724 LRRC8EQ6NSJ5 796 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 CNSTQ6PJW8 725 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 RBM44Q6ZP01 1051 aaKnown RBP10.64□□□□□ -0.71
TCOF1-204ENST00000427724 RIPOR1Q6ZS17 1223 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 ZNF398Q8TD17 642 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 PPP1R10Q96QC0 940 aaKnown RBP10.64□□□□□ -0.71
TCOF1-204ENST00000427724 EPB41L4BQ9H329 900 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 RUVBL2Q9Y230 463 aaKnown RBP10.64□□□□□ -0.71
TCOF1-204ENST00000427724 RAD54BQ9Y620 910 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 AK5Q9Y6K8 562 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 ALAS2P22557 587 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 TGM3Q08188 693 aa10.64□□□□□ -0.71
TCOF1-204ENST00000427724 TOMM20Q15388 145 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms