RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PSTKQ8IV42 348 aaKnown RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 LZTR1Q8N653 840 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 RCBTB1Q8NDN9 531 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 ZDHHC1Q8WTX9 485 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 JPH3Q8WXH2 748 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 USP7Q93009 1102 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 CCDC97Q96F63 343 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 DTD2Q96FN9 168 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 TMEM74Q96NL1 305 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 CCNL2Q96S94 520 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 MGME1Q9BQP7 344 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 BPIFA3Q9BQP9 254 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 NUDT22Q9BRQ3 303 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 FRMD8Q9BZ67 464 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 MRPL47Q9HD33 250 aaKnown RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 PHPT1Q9NRX4 125 aaPredicted RBP11.56□□□□□ -0.56
USP4-204ENST00000416417 TAAR2Q9P1P5 351 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 APPL1Q9UKG1 709 aa11.56□□□□□ -0.56
USP4-204ENST00000416417 MFSD11O43934 449 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ECEL1O95672 775 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 HOXC4P09017 264 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 CCL4P13236 92 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 WT1P19544 449 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 MPSTP25325 297 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CCKBRP32239 447 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 MMP13P45452 471 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CDH6P55285 790 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CDK3Q00526 305 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 KRT81Q14533 505 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 NR1I3Q14994 352 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 C16orf72Q14CZ0 275 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 IQCB1Q15051 598 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 NFKBIBQ15653 356 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 MAP9Q49MG5 647 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 BOLA3Q53S33 107 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 MARC1Q5VT66 337 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 NKAIN2Q5VXU1 208 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 SLITRK4Q8IW52 837 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CBARPQ8N350 705 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 EXD3Q8N9H8 876 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 OR6C4Q8NGE1 309 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 GPBAR1Q8TDU6 330 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 SNRNP27Q8WVK2 155 aaKnown RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 SCAMP4Q969E2 229 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PMEPA1Q969W9 287 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 TRIM11Q96F44 468 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 AGAP2Q99490 1192 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 NUP85Q9BW27 656 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 TEX101Q9BY14 249 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ANAPC7Q9UJX3 599 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PHTF1Q9UMS5 762 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 TENM4Q6N022 2769 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 A0A087X0T9 212 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 RHPN2P1A8MT19 583 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 C9orf172C9J069 976 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 SOCS5O75159 536 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PGLSO95336 258 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 FAM228BP0C875 321 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 MYBL1P10243 752 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 IL4RP24394 825 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ADCY8P40145 1251 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CYP4F2P78329 520 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 CTBSQ01459 385 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 DSC2Q02487 901 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ARMC12Q5T9G4 340 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ZNF574Q6ZN55 896 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 LUZP1Q86V48 1076 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ZNF761Q86XN6 746 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 KIAA1524Q8TCG1 905 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PIH1D2Q8WWB5 315 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 SEMA3CQ99985 751 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 ABCG8Q9H221 673 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PRKAB1Q9Y478 270 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 TTLL3Q9Y4R7 772 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PCDHGA7Q9Y5G6 932 aa11.55□□□□□ -0.56
USP4-204ENST00000416417 PCYT1BQ9Y5K3 369 aaPredicted RBP11.55□□□□□ -0.56
USP4-204ENST00000416417 ZNF462Q96JM2 2506 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 HELZ2Q9BYK8 2649 aaKnown RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 TMX2-CTNND1H3BSU7 103 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 PPM1DO15297 605 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 INPP4BO15327 924 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 NUDT21O43809 227 aaKnown RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 SOD1P00441 154 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 CYP2A6P11509 494 aaPredicted RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 MLLT3P42568 568 aaPredicted RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 GPR1P46091 355 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 ZNF135P52742 658 aaPredicted RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 FANCCQ00597 558 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 ILF3Q12906 894 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP4-204ENST00000416417 EIF3IQ13347 325 aaKnown RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 PIGHQ14442 188 aaPredicted RBP11.54□□□□□ -0.56
USP4-204ENST00000416417 LINC00303Q3SY05 128 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 LRRC66Q68CR7 880 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 TECPR1Q7Z6L1 1165 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 NAGSQ8N159 534 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 BBS5Q8N3I7 341 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 NSMCE1Q8WV22 266 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 EXTL1Q92935 676 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 SCRN2Q96FV2 425 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 FUCA2Q9BTY2 467 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms