RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 KCTD21Q4G0X4 260 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF549Q6P9A3 640 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 TTC33Q6PID6 262 aaPredicted RBP12.7□□□□□ -0.38
SHMT1-205ENST00000395684 CLVS1Q8IUQ0 354 aaPredicted RBP12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MINDY1Q8N5J2 469 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 PTGR2Q8N8N7 351 aaPredicted RBP12.7□□□□□ -0.38
SHMT1-205ENST00000395684 OR10T2Q8NGX3 314 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 TWIST2Q8WVJ9 160 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 BIRC8Q96P09 236 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 PKMYT1Q99640 499 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ACBD6Q9BR61 282 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MFSD1Q9H3U5 465 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MID1IP1Q9NPA3 183 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ABCC13Q9NSE7 274 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 NDUFAF1Q9Y375 327 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SEC24DO94855 1032 aaPredicted RBP12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MYL3P08590 195 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 FGF4P08620 206 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MTHFD2P13995 350 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 HSD17B1P14061 328 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SLC26A3P40879 764 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SCNN1BP51168 640 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SLC36A3Q495N2 470 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 DHRS4L2Q6PKH6 230 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 BEND5Q7L4P6 421 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 GPR141Q7Z602 305 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 GALNT7Q86SF2 657 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SCD5Q86SK9 330 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MIER2Q8N344 545 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 PACRGLQ8N7B6 248 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 HASPINQ8TF76 798 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ISOC1Q96CN7 298 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 MS4A4AQ96JQ5 239 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 SMOC2Q9H3U7 446 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 NMUR1Q9HB89 426 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 RGS18Q9NS28 235 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 OAZ3Q9UMX2 235 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 CDC14AQ9UNH5 594 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 ST3GAL5Q9UNP4 418 aa12.7□□□□□ -0.38
SHMT1-205ENST00000395684 A0A087WXM4 84 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 C17orf102A2RUQ5 167 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TMX2-CTNND1H3BSU7 103 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 UBXN8O00124 270 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ACOX3O15254 700 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 HAPLN1P10915 354 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 HTR7P34969 479 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 APLP1P51693 650 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 MLLT6P55198 1093 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TMED1Q13445 227 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PTPRCAPQ14761 206 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 OR4D1Q15615 310 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PFKFB4Q16877 469 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 GEN1Q17RS7 908 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ZBED5Q49AG3 693 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 LCN8Q6JVE9 175 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 AGMOQ6ZNB7 445 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TFAP2DQ7Z6R9 452 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 GPR180Q86V85 440 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ADGRG5Q8IZF4 528 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ADAMTS16Q8TE57 1224 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 LRRC58Q96CX6 371 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TBATAQ96M53 351 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 SLC52A3Q9NQ40 469 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TUBA8Q9NY65 449 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 CEP350Q5VT06 3117 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 CROCCQ5TZA2 2017 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 RNF103-CHMP3A0A140T963 221 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TRIM64A6NGJ6 449 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 AZIN1O14977 448 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ANGPT2O15123 496 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 LDB2O43679 373 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 B3GAT3O94766 335 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 LINC00032P0C843 101 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 IL10P22301 178 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 FASP25445 335 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PSMA4P25789 261 aaKnown RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 CCT8P50990 548 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 RENBPP51606 427 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 SLC5A3P53794 718 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 INPP5AQ14642 412 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 SIRPB2Q5JXA9 342 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PIK3R6Q5UE93 754 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 DUS1LQ6P1R4 473 aaKnown RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PLEKHH3Q7Z736 793 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 DDIASQ8IXT1 998 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 GABPB2Q8TAK5 448 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 TRPC4APQ8TEL6 797 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ABTB1Q969K4 478 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 C12orf43Q96C57 262 aaKnown RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 PABPC5Q96DU9 382 aaKnown RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 HMCESQ96FZ2 354 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 FBXL20Q96IG2 436 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 FEM1CQ96JP0 617 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 MYRFLQ96LU7 910 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 SDR39U1Q9NRG7 319 aaPredicted RBP12.69□□□□□ -0.38
SHMT1-205ENST00000395684 VPS45Q9NRW7 570 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 ACTR3BQ9P1U1 418 aa12.69□□□□□ -0.38
SHMT1-205ENST00000395684 H3BMM5 538 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 ARPC2O15144 300 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 GJB3O75712 270 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms