RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PSMD7P51665 324 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 AFF1P51825 1210 aaKnown RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 TNK2Q07912 1038 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CYP51A1Q16850 503 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CILP2Q8IUL8 1156 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CLYBLQ8N0X4 340 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 FEM1CQ96JP0 617 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 PPP1R10Q96QC0 940 aaKnown RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 HOPXQ9BPY8 73 aaPredicted RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 PAIP1Q9H074 479 aaKnown RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 MID1IP1Q9NPA3 183 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 TBCCD1Q9NVR7 557 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 NYNRINQ9P2P1 1898 aaKnown RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 UNCXA6NJT0 531 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 WISP3O95389 354 aaPredicted RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 HOXD8P13378 290 aaPredicted RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 GFAPP14136 432 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 BDNFP23560 247 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 HMOX2P30519 316 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 AXLP30530 894 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 MAXP61244 160 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 HERVK_113P63132 956 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 BNIP2Q12982 314 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 NEDD8Q15843 81 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 RABL3Q5HYI8 236 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 TWF2Q6IBS0 349 aaKnown RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 PRMT9Q6P2P2 845 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 KDELC1Q6UW63 502 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 SPRED1Q7Z699 444 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 PHYKPLQ8IUZ5 450 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 MINDY1Q8N5J2 469 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 C3orf58Q8NDZ4 430 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CALML6Q8TD86 181 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 MYLPFQ96A32 169 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 SMARCD1Q96GM5 515 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 ERVK-6Q9BXR3 956 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 POLR3BQ9NW08 1133 aaPredicted RBP16.38■□□□□ 0.21
SDC4-201ENST00000372733 MPP6Q9NZW5 540 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 CRYL1Q9Y2S2 319 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 V9GYQ6 96 aa16.38■□□□□ 0.21
SDC4-201ENST00000372733 DUSP28Q4G0W2 176 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TBC1D15Q8TC07 691 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 LRRC58Q96CX6 371 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TSPYL2Q9H2G4 693 aaPredicted RBP16.37■□□□□ 0.21
SDC4-201ENST00000372733 SMIM35A0A1B0GVV1 85 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TTC24A2A3L6 582 aaPredicted RBP16.37■□□□□ 0.21
SDC4-201ENST00000372733 UBXN8O00124 270 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 MOCS2O96007 188 aaPredicted RBP16.37■□□□□ 0.21
SDC4-201ENST00000372733 DCKP27707 260 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 ABRAXAS1Q6UWZ7 409 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 KCTD8Q6ZWB6 473 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 SLC16A10Q8TF71 515 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TUBGCP3Q96CW5 907 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TUBB1Q9H4B7 451 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 TBC1D23Q9NUY8 699 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 SLC38A7Q9NVC3 462 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 KCTD3Q9Y597 815 aa16.37■□□□□ 0.21
SDC4-201ENST00000372733 H3BMM5 538 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SUPT3HO75486 399 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SNAP29O95721 258 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 LINC00032P0C843 101 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 CAPGP40121 348 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 GSK3BP49841 420 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SERPINH1P50454 418 aaKnown RBP16.36■□□□□ 0.21
SDC4-201ENST00000372733 BNIP3Q12983 259 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 PLCL1Q15111 1095 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 TMTC4Q5T4D3 741 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 ANKRD13AQ8IZ07 590 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 TRPV3Q8NET8 790 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SCAMP5Q8TAC9 235 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 DNAJB14Q8TBM8 379 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 VPS33AQ96AX1 596 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 FCRL2Q96LA5 508 aaPredicted RBP16.36■□□□□ 0.21
SDC4-201ENST00000372733 SEZ6LQ9BYH1 1024 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 RGS18Q9NS28 235 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 POLG2Q9UHN1 485 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 USP22Q9UPT9 525 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SH3GLB1Q9Y371 365 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 PTCH2Q9Y6C5 1203 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 A0A1B0GTL3 188 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 AZIN1O14977 448 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 IRAK2O43187 625 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 S1PR4O95977 384 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 HGFP14210 728 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 CES1P23141 567 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 LHX1P48742 406 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 CCR3P51677 355 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 CLCNKBP51801 687 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 PCBP1Q15365 356 aaKnown RBP eCLIP16.36■□□□□ 0.216e-7■■■■□ 25.9
SDC4-201ENST00000372733 CYBRD1Q53TN4 286 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 FBXO48Q5FWF7 155 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 ARTNQ5T4W7 220 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 MANEALQ5VSG8 457 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 DHRSXQ8N5I4 330 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 MAGEE2Q8TD90 523 aaPredicted RBP16.36■□□□□ 0.21
SDC4-201ENST00000372733 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.36■□□□□ 0.21
SDC4-201ENST00000372733 DOK1Q99704 481 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 NT5MQ9NPB1 228 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 SMPD3Q9NY59 655 aaPredicted RBP16.36■□□□□ 0.21
SDC4-201ENST00000372733 NUDT5Q9UKK9 219 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms