RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 GLB1LQ6UWU2 654 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 EP400NLQ6ZTU2 488 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 EFL1Q7Z2Z2 1120 aaKnown RBP14.28□□□□□ -0.12
CD48-201ENST00000368045 PIM3Q86V86 326 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 ZNF354CQ86Y25 554 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 METTL25Q8N6Q8 603 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 TBATAQ96M53 351 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 MUC13Q9H3R2 512 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 RETREG1Q9H6L5 497 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 SYTL2Q9HCH5 934 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 CATSPERZQ9NTU4 200 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 CNOT6Q9ULM6 557 aaKnown RBP14.28□□□□□ -0.12
CD48-201ENST00000368045 DNAJC15Q9Y5T4 150 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 SNX13Q9Y5W8 968 aa14.28□□□□□ -0.12
CD48-201ENST00000368045 A0A0J9YYE9 177 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 DYTNA2CJ06 578 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 C7orf72A4D263 438 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 IGLV3-27P01718 113 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 OR4Q2P0C623 313 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 LBPP18428 481 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 HDCP19113 662 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ATP6V0D1P61421 351 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 SH3BP2P78314 561 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 TIAL1Q01085 375 aaKnown RBP eCLIP14.27□□□□□ -0.12
CD48-201ENST00000368045 RING1Q06587 406 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 DSC1Q08554 894 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 EFEMP1Q12805 493 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ZNF235Q14590 738 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 INPP5AQ14642 412 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 KIF19Q2TAC6 998 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 MFSD14CQ5VZR4 134 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ALG1LQ6GMV1 187 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 PPP4R4Q6NUP7 873 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 IYDQ6PHW0 289 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 KLHDC10Q6PID8 442 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ERMP1Q7Z2K6 904 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 LDB1Q86U70 411 aaPredicted RBP14.27□□□□□ -0.12
CD48-201ENST00000368045 OR52K2Q8NGK3 314 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 TWIST2Q8WVJ9 160 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 IGSF8Q969P0 613 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 KIAA1191Q96A73 305 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 DNAJC1Q96KC8 554 aaKnown RBP14.27□□□□□ -0.12
CD48-201ENST00000368045 C3orf30Q96M34 536 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ATOH8Q96SQ7 321 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 SEMA3CQ99985 751 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 GRIP2Q9C0E4 1043 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 C8orf4Q9NR00 106 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 PNPLA3Q9NST1 481 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 COMMD8Q9NX08 183 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 ETAA1Q9NY74 926 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 KCTD3Q9Y597 815 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 TRPM7Q96QT4 1865 aa14.27□□□□□ -0.12
CD48-201ENST00000368045 SRCAPQ6ZRS2 3230 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 CCDC162PA2VCL2 907 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 OR51F1A6NGY5 319 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 HNRNPRO43390 633 aaKnown RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 KERAO60938 352 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 EOMESO95936 686 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 SLC4A1P02730 911 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 IDO1P14902 403 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 ARSAP15289 507 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 STC1P52823 247 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 GRIK2Q13002 908 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 GK3PQ14409 553 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 DDR2Q16832 855 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 MYLK3Q32MK0 819 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 MTX3Q5HYI7 312 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 RAP1GAP2Q684P5 730 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 SPATA19Q7Z5L4 167 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 PHYKPLQ8IUZ5 450 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 BBS5Q8N3I7 341 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 TSPAN14Q8NG11 270 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 OR9I1Q8NGQ6 314 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 OR4L1Q8NH43 312 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 STAG3L4Q8TBR4 150 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 HM13Q8TCT9 377 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 TRPC4APQ8TEL6 797 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 NMD3Q96D46 503 aaKnown RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 RPRD1AQ96P16 312 aaPredicted RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 TCF12Q99081 682 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 NUSAP1Q9BXS6 441 aaKnown RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 ANKRD60Q9BZ19 345 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 DERL2Q9GZP9 239 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.27□□□□□ -0.13
CD48-201ENST00000368045 FBRSL1Q9HCM7 1045 aaKnown RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 MID1IP1Q9NPA3 183 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 SDR39U1Q9NRG7 319 aaPredicted RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 CCM2LQ9NUG4 571 aaPredicted RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.27□□□□□ -0.13
CD48-201ENST00000368045 PCDHGB4Q9UN71 923 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 CRYL1Q9Y2S2 319 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 RNF11Q9Y3C5 154 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 PCDHGB5Q9Y5G0 923 aa14.27□□□□□ -0.13
CD48-201ENST00000368045 MRPL42Q9Y6G3 142 aaKnown RBP14.27□□□□□ -0.13
CD48-201ENST00000368045 PLXNA3P51805 1871 aa14.26□□□□□ -0.13
CD48-201ENST00000368045 ATP6AP2A0A1C7CYW4 349 aa14.26□□□□□ -0.13
CD48-201ENST00000368045 F8W810 466 aa14.26□□□□□ -0.13
CD48-201ENST00000368045 CCL22O00626 93 aa14.26□□□□□ -0.13
CD48-201ENST00000368045 PIP5K1BO14986 540 aa14.26□□□□□ -0.13
CD48-201ENST00000368045 SYN3O14994 580 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms