RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CDH13P55290 713 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 STX5Q13190 355 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 FASTKQ14296 549 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 SLC8B1Q6J4K2 584 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 LARP4Q71RC2 724 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 APLFQ8IW19 511 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 EXOC2Q96KP1 924 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 MRPL9Q9BYD2 267 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 PPP1R12CQ9BZL4 782 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 PCDHGA7Q9Y5G6 932 aa20.81■□□□□ 0.92
CCDC88B-203ENST00000359902 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 FBP2O00757 339 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 HOXA2O43364 376 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 PRLP01236 227 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 OR1D2P34982 312 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 SGSHP51688 502 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 SH3BP2P78314 561 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 MRPS22P82650 360 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 AGKQ53H12 422 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 HECTD3Q5T447 861 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 OGFRL1Q5TC84 451 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 FAM126BQ8IXS8 530 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 PTGR2Q8N8N7 351 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 RHEBL1Q8TAI7 183 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 RMDN1Q96DB5 314 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 INTS10Q9NVR2 710 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 BCAP29Q9UHQ4 241 aa20.8■□□□□ 0.92
CCDC88B-203ENST00000359902 UBXN8O00124 270 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ACOT8O14734 319 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CLDN11O75508 207 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 BCAS2O75934 225 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 PDAP1Q13442 181 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 MAPRE2Q15555 327 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CLYBLQ8N0X4 340 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 BHLHE22Q8NFJ8 381 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 MDGA1Q8NFP4 955 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 OR4K2Q8NGD2 314 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 C3orf30Q96M34 536 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ATOH8Q96SQ7 321 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 TFB2MQ9H5Q4 396 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 GKN1Q9NS71 199 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CCDC167Q9P0B6 97 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ATP6AP2A0A1C7CYW4 349 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 PPP6CO00743 305 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 RNASEH1O60930 286 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ATP6AP2O75787 350 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 SIX3O95343 332 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 HDCP19113 662 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ALDH1A3P47895 512 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 TUFMP49411 452 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 PSME3P61289 254 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 LRP8Q14114 963 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CYTH1Q15438 398 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 SETMARQ53H47 684 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ZFP1Q6P2D0 407 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 KLHDC10Q6PID8 442 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 PCDH20Q8N6Y1 951 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 PDZD8Q8NEN9 1154 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CEP295NLQ96MC4 621 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 SMIM14Q96QK8 99 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 DDX50Q9BQ39 737 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 CACNA2D2Q9NY47 1150 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 MTRRQ9UBK8 725 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 MED16Q9Y2X0 877 aa20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ARIH1Q9Y4X5 557 aaPredicted RBP20.79■□□□□ 0.92
CCDC88B-203ENST00000359902 ILVBLA1L0T0 632 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 LRRC14BA6NHZ5 514 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 STC2O76061 302 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 CDK14O94921 469 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 MT-CO1P00395 513 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 UQCRBP14927 111 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 TAF1AQ15573 450 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 PFKFB4Q16877 469 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 OVCA2Q8WZ82 227 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 LPGAT1Q92604 370 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 C19orf60Q96EN9 201 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 UBA6A0AVT1 1052 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 EFEMP2O95967 443 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 RHOCP08134 193 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 FGF4P08620 206 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 HMGA1P17096 107 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 PSMA3P25788 255 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 CORO1AP31146 461 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 FMO4P31512 558 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 PSMD8P48556 350 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 ZNF177Q13360 481 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 PAQR3Q6TCH7 311 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 GLT6D1Q7Z4J2 308 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 FAM156AQ8NDB6 213 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 PLD4Q96BZ4 506 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 ASB2Q96Q27 587 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 TUBGCP5Q96RT8 1024 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 TDRD1Q9BXT4 1180 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 FBRSL1Q9HCM7 1045 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 SCUBE2Q9NQ36 999 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 ADA2Q9NZK5 511 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 SARDHQ9UL12 918 aa20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 AGO1Q9UL18 857 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-203ENST00000359902 DNAJC15Q9Y5T4 150 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms