RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 EIF2S3P41091 472 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 MAP3K7CLP57077 242 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 YBX1P67809 324 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 KDSRQ06136 332 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CALCOCO2Q13137 446 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 DPYSL3Q14195 570 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 KIR3DS1Q14943 382 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SLMAPQ14BN4 828 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 OASLQ15646 514 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SMAD1Q15797 465 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CFAP58Q5T655 872 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ERMARDQ5T6L9 678 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 LCE5AQ5TCM9 118 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 EMC10Q5UCC4 262 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SDHAF4Q5VUM1 108 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ALS2CLQ60I27 953 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 MSANTD2Q6P1R3 559 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 PCSK4Q6UW60 755 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 MFSD7Q6UXD7 560 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 TRMT11Q7Z4G4 463 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 TADA2BQ86TJ2 420 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 LRRTM3Q86VH5 581 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 HOOK3Q86VS8 718 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 KIAA1958Q8N8K9 716 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ARL14EPQ8N8R7 260 aaPredicted RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 KCTD6Q8NC69 237 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SETD7Q8WTS6 366 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 RAPGEF5Q92565 580 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 FAM149B1Q96BN6 582 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 RTP4Q96DX8 246 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 PIWIL1Q96J94 861 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SIGLEC10Q96LC7 697 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CFAP57Q96MR6 1250 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SERPINB11Q96P15 392 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 KCNC2Q96PR1 638 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CYP2S1Q96SQ9 504 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 FMO2Q99518 471 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CDC6Q99741 560 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 FERMT1Q9BQL6 677 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CNTD2Q9H8S5 307 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ZWILCHQ9H900 591 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 IL21RQ9HBE5 538 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 PCDH18Q9HCL0 1135 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 EPB41L5Q9HCM4 733 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ARHGEF4Q9NR80 690 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 OLA1Q9NTK5 396 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ZNF446Q9NWS9 450 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 TNFRSF10DQ9UBN6 386 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 SHOC2Q9UQ13 582 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 NEU2Q9Y3R4 380 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 OBSL1O75147 1896 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 PCNX2A6NKB5 2137 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 A0A1B0GTW7 788 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 FAM149AA5PLN7 773 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 HACD1B0YJ81 288 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 LEFTY2O00292 366 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 APOL1O14791 398 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 MTSS1O43312 755 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 HCRTO43612 131 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TLX3O43711 291 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 RRP9O43818 475 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TRIM13O60858 407 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PPFIA2O75334 1257 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SEC31AO94979 1220 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 GJB6O95452 261 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 LCP1P13796 627 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 HOXB2P14652 356 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 NME1P15531 152 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ECHS1P30084 290 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ARL4AP40617 200 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 GRIA2P42262 883 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TNFRSF4P43489 277 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SLC6A11P48066 632 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PPP3CCP48454 512 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CXCR3P49682 368 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SULT1E1P49888 294 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TUBP50607 506 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SLC5A3P53794 718 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CDH6P55285 790 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 EIF3BP55884 814 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ZXDBP98169 803 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 EIF4EBP2Q13542 120 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 KRT81Q14533 505 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CASP8Q14790 479 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 NOMO1Q15155 1222 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 DHCR24Q15392 516 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PPP1R7Q15435 360 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 DDR2Q16832 855 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 DCAF6Q58WW2 860 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 WDR45BQ5MNZ6 344 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ZFYVE27Q5T4F4 411 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SYCP2LQ5T4T6 812 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 OTUD1Q5VV17 481 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ARMC3Q5W041 872 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TTC27Q6P3X3 843 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 KLHDC10Q6PID8 442 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 LRIG3Q6UXM1 1119 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 BHLHA9Q7RTU4 235 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 GPR155Q7Z3F1 870 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms