RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ARMCX2Q7L311 632 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 URGCPQ8TCY9 931 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 BSNDQ8WZ55 320 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ACOX2Q99424 681 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 GCNT4Q9P109 453 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB26Q9ULW5 256 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ORC5O43913 435 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FKBP6O75344 327 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RBP3P10745 1247 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC15A1P46059 708 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CEBPDP49716 269 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ACTR2P61160 394 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF616Q08AN1 781 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MTM1Q13496 603 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 LRRC41Q15345 812 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SLFN13Q68D06 897 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TTC27Q6P3X3 843 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 POTEHQ6S545 545 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TTLL10Q6ZVT0 673 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SERPINA12Q8IW75 414 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 REXO1L1PQ8IX06 675 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR2D3Q8NGH3 330 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR13G1Q8NGZ3 307 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 C1orf216Q8TAB5 229 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HELQQ8TDG4 1101 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SGSM3Q96HU1 749 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 NGLY1Q96IV0 654 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MARK4Q96L34 752 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MEIS3Q99687 375 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OCSTAMPQ9BR26 566 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TCEAL7Q9BRU2 100 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM100Q9NV29 134 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 HEY2Q9UBP5 337 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PTCH2Q9Y6C5 1203 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MYO3BQ8WXR4 1341 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM230AA0A1W2PPH8 454 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 NUPL2O15504 423 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 DNAJB5O75953 348 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 DEXIO95424 95 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB36O95755 333 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PLEKP08567 350 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CYP2C8P10632 490 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ITGA2P17301 1181 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 CCNE1P24864 410 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC1A4P43007 532 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ARSEP51690 589 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 BLOC1S1P78537 153 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PKP1Q13835 747 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 PEA15Q15121 130 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM83EQ2M2I3 478 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 UBE2UQ5VVX9 321 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 DHRS11Q6UWP2 260 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF767PQ75MW2 155 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 RNF148Q8N7C7 305 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR13C9Q8NGT0 318 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR6Y1Q8NGX8 325 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 GPT2Q8TD30 523 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 MFSD3Q96ES6 412 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 FAR2Q96K12 515 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 YTHDF1Q9BYJ9 559 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 OR2J1Q9GZK6 312 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 DDX47Q9H0S4 455 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM206Q9H813 350 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 ATF5Q9Y2D1 282 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 TNKSO95271 1327 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 GRIN2BQ13224 1484 aa7.64□□□□□ -1.19
LIMCH1-201ENST00000313860 SALL3Q9BXA9 1300 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LRP5LA4QPB2 252 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC25A12O75746 678 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ATP1A3P13637 1013 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ENDOUP21128 410 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ACVR2BQ13705 512 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NCEH1Q6PIU2 408 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SERPINA13PQ6UXR4 307 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 NAPRTQ6XQN6 538 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 TRMT11Q7Z4G4 463 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LHFPL3Q86UP9 236 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PLEKHM2Q8IWE5 1019 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 SFRP1Q8N474 314 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 OR5A2Q8NGI9 324 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 OR5K1Q8NHB7 308 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 COQ8BQ96D53 544 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ARSGQ96EG1 525 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 REXO5Q96IC2 774 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF333Q96JL9 665 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PCDHAC1Q9H158 963 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 RHBGQ9H310 441 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 IKZF2Q9UKS7 526 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ITGA11Q9UKX5 1188 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 AP4B1Q9Y6B7 739 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ARHGEF12Q9NZN5 1544 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ASTN2O75129 1339 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 PRORSD1PA6NEY8 169 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF878C9JN71 531 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 DDX3XO00571 662 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 KDELR3O43731 214 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 LDOC1O95751 146 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 IRF1P10914 325 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 BAIAP2L2Q6UXY1 529 aa7.63□□□□□ -1.19
LIMCH1-201ENST00000313860 TMC4Q7Z404 712 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms