RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PYM1Q9BRP8 204 aaKnown RBP4.07□□□□□ -1.76
CD44-239ENST00000639002 GLIS2Q9BZE0 524 aaPredicted RBP4.07□□□□□ -1.76
CD44-239ENST00000639002 ZNF696Q9H7X3 374 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 PLEKHA5Q9HAU0 1116 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 MMP25Q9NPA2 562 aa4.07□□□□□ -1.76
CD44-239ENST00000639002 BCAT2O15382 392 aaPredicted RBP4.06□□□□□ -1.76
CD44-239ENST00000639002 TACC1O75410 805 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 GALTP07902 379 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 MAOAP21397 527 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 C14orf177Q52M58 125 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 ZNF766Q5HY98 468 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 KRBA2Q6ZNG9 492 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 NOL8Q76FK4 1167 aaKnown RBP4.06□□□□□ -1.76
CD44-239ENST00000639002 LINGO2Q7L985 606 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 NFE4Q86UQ8 179 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.06□□□□□ -1.76
CD44-239ENST00000639002 BEST2Q8NFU1 509 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 TNIP2Q8NFZ5 429 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 FBXO17Q96EF6 278 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 DUX3Q96PT4 197 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 PCYT2Q99447 389 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 ABCF3Q9NUQ8 709 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 HSF4Q9ULV5 492 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 GPR52Q9Y2T5 361 aa4.06□□□□□ -1.76
CD44-239ENST00000639002 TAF4O00268 1085 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 MT-CYBP00156 380 aaPredicted RBP4.05□□□□□ -1.76
CD44-239ENST00000639002 SERPINB2P05120 415 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 MYOD1P15172 320 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 GM2AP17900 193 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TMPOP42166 694 aaKnown RBP4.05□□□□□ -1.76
CD44-239ENST00000639002 HNRNPH2P55795 449 aaKnown RBP4.05□□□□□ -1.76
CD44-239ENST00000639002 VEPH1Q14D04 833 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 CCDC6Q16204 474 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 CTF1Q16619 201 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 STXBP5Q5T5C0 1151 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 ATG16L1Q676U5 607 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TXNDC8Q6A555 127 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 SLC36A4Q6YBV0 504 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 KRTAP7-1Q8IUC3 87 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 ZCCHC9Q8N567 271 aaKnown RBP4.05□□□□□ -1.76
CD44-239ENST00000639002 KCNH5Q8NCM2 988 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 MAGEC3Q8TD91 643 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 PPM1EQ8WY54 764 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 HERVK_113Q902F9 699 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 ARPC5LQ9BPX5 153 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 GFRA4Q9GZZ7 299 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TKTL2Q9H0I9 626 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 PLEKHA4Q9H4M7 779 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 C20orf141Q9NUB4 165 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TAAR2Q9P1P5 351 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 FBXO9Q9UK97 447 aaPredicted RBP4.05□□□□□ -1.76
CD44-239ENST00000639002 POU2F3Q9UKI9 436 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 PADI1Q9ULC6 663 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TCF19Q9Y242 345 aa4.05□□□□□ -1.76
CD44-239ENST00000639002 TMEM202A6NGA9 273 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 LILRA5A6NI73 299 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 CAPN9O14815 690 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 TCEA3O75764 348 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 LDHAP00338 332 aaKnown RBP4.04□□□□□ -1.76
CD44-239ENST00000639002 CORO1AP31146 461 aaKnown RBP4.04□□□□□ -1.76
CD44-239ENST00000639002 GPD2P43304 727 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 METAP2P50579 478 aaKnown RBP eCLIP4.04□□□□□ -1.76
CD44-239ENST00000639002 CLCNKAP51800 687 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 CDH15P55291 814 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 RNPS1Q15287 305 aaKnown RBP4.04□□□□□ -1.76
CD44-239ENST00000639002 IRAK1BP1Q5VVH5 260 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 RGMBQ6NW40 437 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 TMEM81Q6P7N7 255 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 LDHAL6AQ6ZMR3 332 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.04□□□□□ -1.76
CD44-239ENST00000639002 KMT5CQ86Y97 462 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 TDRPQ86YL5 185 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 DSELQ8IZU8 1212 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 SPATA6LQ8N4H0 392 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 ZBTB2Q8N680 514 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 SPATA5Q8NB90 893 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 C11orf65Q8NCR3 313 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 SLC24A4Q8NFF2 622 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 DMBX1Q8NFW5 382 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 CDCA5Q96FF9 252 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 BBS4Q96RK4 519 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 RIC8AQ9NPQ8 531 aa4.04□□□□□ -1.76
CD44-239ENST00000639002 AKR1B15C9JRZ8 316 aaPredicted RBP4.03□□□□□ -1.76
CD44-239ENST00000639002 FAM72CH0Y354 149 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 PIP5K1CO60331 668 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 TFP02787 698 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 NR1D1P20393 614 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 FMO5P49326 533 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 ATP12AP54707 1039 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 PITX1P78337 314 aaPredicted RBP4.03□□□□□ -1.76
CD44-239ENST00000639002 FCN2Q15485 313 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 KRT24Q2M2I5 525 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 TCTN1Q2MV58 587 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 SLC45A4Q5BKX6 768 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 FAM72AQ5TYM5 149 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 PLEKHA7Q6IQ23 1121 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 FAM72DQ6L9T8 149 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 CPLX2Q6PUV4 134 aaKnown RBP4.03□□□□□ -1.76
CD44-239ENST00000639002 FAM72BQ86X60 149 aa4.03□□□□□ -1.76
CD44-239ENST00000639002 RNF113BQ8IZP6 322 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms