RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZFXP17010 805 aaPredicted RBP19.27■□□□□ 0.67
CLN3-260ENST00000637578 BLKP51451 505 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 IFI35P80217 286 aaPredicted RBP19.27■□□□□ 0.67
CLN3-260ENST00000637578 DAB2P98082 770 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 ITKQ08881 620 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 NIPAL4Q0D2K0 466 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 ACOX1Q15067 660 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 PNCKQ6P2M8 343 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 CCNYQ8ND76 341 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 FUBP1Q96AE4 644 aaKnown RBP19.27■□□□□ 0.67
CLN3-260ENST00000637578 RNF25Q96BH1 459 aaPredicted RBP19.27■□□□□ 0.67
CLN3-260ENST00000637578 BOCQ9BWV1 1114 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 MAK16Q9BXY0 300 aaKnown RBP19.27■□□□□ 0.67
CLN3-260ENST00000637578 NCKIPSDQ9NZQ3 722 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 DGKBQ9Y6T7 804 aa19.27■□□□□ 0.67
CLN3-260ENST00000637578 DMXL2Q8TDJ6 3036 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 PSTPIP1O43586 416 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 KRT1P04264 644 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 TSHRP16473 764 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 MARCKSL1P49006 195 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 CLDN6P56747 220 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 INSM1Q01101 510 aaPredicted RBP19.26■□□□□ 0.67
CLN3-260ENST00000637578 PTPRRQ15256 657 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 DEFB133Q30KQ1 61 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 HES3Q5TGS1 186 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 ENPP7Q6UWV6 458 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 MFSD7Q6UXD7 560 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 NYAP1Q6ZVC0 841 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 USP45Q70EL2 814 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 HSD11B1LQ7Z5J1 315 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 REXO1L1PQ8IX06 675 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 SYCE1Q8N0S2 351 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 PELI3Q8N2H9 469 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 SDR16C5Q8N3Y7 309 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 FSTL5Q8N475 847 aaPredicted RBP19.26■□□□□ 0.67
CLN3-260ENST00000637578 CNTD1Q8N815 330 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 PDCD7Q8N8D1 485 aaKnown RBP19.26■□□□□ 0.67
CLN3-260ENST00000637578 ATL2Q8NHH9 583 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 WDR92Q96MX6 357 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 TDRD1Q9BXT4 1180 aaKnown RBP19.26■□□□□ 0.67
CLN3-260ENST00000637578 HEY1Q9Y5J3 304 aa19.26■□□□□ 0.67
CLN3-260ENST00000637578 TRABD2BA6NFA1 517 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 TNFRSF10CO14798 259 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 YY2O15391 372 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 ZSCAN12O43309 604 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 RASGRP1O95267 797 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 FTCDO95954 541 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 JCHAINP01591 159 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 MYF5P13349 255 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 JUPP14923 745 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 HNF1BP35680 557 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 CDKN2BP42772 138 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 DUSP3P51452 185 aaPredicted RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 SRP54P61011 504 aaKnown RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 RPL26P61254 145 aaKnown RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 C1orf61Q13536 156 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 PDK1Q15118 436 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 KCTD16Q68DU8 428 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 LVRNQ6Q4G3 990 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 TECPR1Q7Z6L1 1165 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 NT5DC3Q86UY8 548 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 PROSER1Q86XN7 944 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 KRT35Q92764 455 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 TSACCQ96A04 125 aaPredicted RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 NUS1Q96E22 293 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 DTD2Q96FN9 168 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 BRD8Q9H0E9 1235 aa19.25■□□□□ 0.67
CLN3-260ENST00000637578 TRMT1Q9NXH9 659 aaKnown RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 RPL26L1Q9UNX3 145 aaKnown RBP19.25■□□□□ 0.67
CLN3-260ENST00000637578 ZZEF1O43149 2961 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 A0A0J9YYE9 177 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 TMEM202A6NGA9 273 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 KCNK1O00180 336 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 KRT37O76014 449 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 TRBC1P01850 177 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 MMP2P08253 660 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 ALPIP09923 528 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 TEAD1P28347 426 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 ZBTB17Q13105 803 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 C6orf132Q5T0Z8 1188 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 NPNTQ6UXI9 565 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 PEX26Q7Z412 305 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 TSPAN33Q86UF1 283 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 HID1Q8IV36 788 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 NDUFAF2Q8N183 169 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 DCBLD1Q8N8Z6 715 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 LGR4Q9BXB1 951 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 EVA1BQ9NVM1 165 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 KLQ9UEF7 1012 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 AMFRQ9UKV5 643 aa19.24■□□□□ 0.67
CLN3-260ENST00000637578 EME2A4GXA9 379 aaPredicted RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 SRRM3A6NNA2 597 aaPredicted RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 CACNB4O00305 520 aaPredicted RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 KRT10P13645 584 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CTPS1P17812 591 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CTNNA1P35221 906 aaKnown RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 ETV3P41162 512 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 NR2C2P49116 596 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 PTSQ03393 145 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms