RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PTGDR2Q9Y5Y4 395 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 UBR2Q8IWV8 1755 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 PRSS51A0A1B0GVH4 220 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 PSMD11O00231 422 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 BTN3A1O00481 513 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 THRBP10828 461 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SULT2A1Q06520 285 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 IQSEC1Q6DN90 963 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HORMAD1Q86X24 394 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 EID3Q8N140 333 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SIX5Q8N196 739 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 TWIST2Q8WVJ9 160 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 ARNTL2Q8WYA1 636 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HSFY1Q96LI6 401 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HGH1Q9BTY7 390 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 CATSPERBQ9H7T0 1116 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 AKTIPQ9H8T0 292 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 RASSF1Q9NS23 344 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 TCRBV5S1A1TA0A578 114 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 H0Y858 1186 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 FMO4P31512 558 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 GRIK1P39086 918 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 MTHFRP42898 656 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 GMPSP49915 693 aaPredicted RBP11.05□□□□□ -0.64
CLN3-244ENST00000636147 FKBP1AP62942 108 aaKnown RBP11.05□□□□□ -0.64
CLN3-244ENST00000636147 TAF12Q16514 161 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 NOTUMQ6P988 496 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 ZNF534Q76KX8 674 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 ZHX1-C8orf76Q96EF9 292 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HEPHQ9BQS7 1158 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 FEM1AQ9BSK4 669 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 MIR1-1HGQ9H1L0 117 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 PSME2Q9UL46 239 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SLC30A1Q9Y6M5 507 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 A8MT66 165 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 H3BMQ9 156 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TGFB3P10600 412 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ZNF26P17031 533 aaPredicted RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 CD97P48960 835 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ECT2LQ008S8 904 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TRAP1Q12931 704 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 SNX17Q15036 470 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 MAPRE1Q15691 268 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 GCNT7Q6ZNI0 430 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 PIWIL3Q7Z3Z3 882 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 MIB1Q86YT6 1006 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CHERPQ8IWX8 916 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 RAB2BQ8WUD1 216 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 COG8Q96MW5 612 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 BIRC8Q96P09 236 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 KLHL5Q96PQ7 755 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 VAT1Q99536 393 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 BCO2Q9BYV7 579 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 EPS8L2Q9H6S3 715 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLN3-244ENST00000636147 PADI4Q9UM07 663 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 SNX8Q9Y5X2 465 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 COL18A1P39060 1754 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 G3V2T6 193 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TBX1O43435 398 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CLPXO76031 633 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 GUCA1CO95843 209 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 F9P00740 461 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 NPR3P17342 541 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 HOXD12P35452 270 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CD86P42081 329 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 DPP6P42658 865 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 WNT3AP56704 352 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 MTPNP58546 118 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TRAF3Q13114 568 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ZRANB3Q5FWF4 1079 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 DCDC5Q6ZRR9 648 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CPSF7Q8N684 471 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 B3GALNT2Q8NCR0 500 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ZNF540Q8NDQ6 660 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TRPV3Q8NET8 790 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 MCFD2Q8NI22 146 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 STYXQ8WUJ0 223 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 FAM120BQ96EK7 910 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 SLC45A3Q96JT2 553 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 RHOBTB2Q9BYZ6 727 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 GBA3Q9H227 469 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ELP3Q9H9T3 547 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ITM2CQ9NQX7 267 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 LATS2Q9NRM7 1088 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 OLAHQ9NV23 265 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 MPP6Q9NZW5 540 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 USP54Q70EL1 1684 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 A8MU76 341 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 PDZK1P1A8MUH7 402 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 H3BRB1 525 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 UBXN8O00124 270 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 FADS2O95864 444 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 COL6A2P12110 1019 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 ITGB6P18564 788 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 AKT1P31749 480 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 GSK3BP49841 420 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 NKX2-5P52952 324 aaPredicted RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 CYP4F2P78329 520 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CYP4F3Q08477 520 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms