RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CPP00450 1065 aa18.45■□□□□ 0.54
CLN3-241ENST00000635861 VIPR1P32241 457 aa18.45■□□□□ 0.54
CLN3-241ENST00000635861 HLTFQ14527 1009 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLN3-241ENST00000635861 CLPPQ16740 277 aaPredicted RBP18.45■□□□□ 0.54
CLN3-241ENST00000635861 E4F1Q66K89 784 aaPredicted RBP18.45■□□□□ 0.54
CLN3-241ENST00000635861 CCNJLQ8IV13 435 aa18.45■□□□□ 0.54
CLN3-241ENST00000635861 NIPA2Q8N8Q9 360 aa18.45■□□□□ 0.54
CLN3-241ENST00000635861 FAM46DQ8NEK8 389 aa18.45■□□□□ 0.54
CLN3-241ENST00000635861 RCOR3Q9P2K3 495 aaPredicted RBP18.45■□□□□ 0.54
CLN3-241ENST00000635861 PRSS38A1L453 326 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 NOBOXO60393 691 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 MAFKO60675 156 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 PEX11BO96011 259 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 UGT1A5P35504 534 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 ZNF165P49910 485 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 CLN3Q13286 438 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 CNGA3Q16281 694 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 CCDC81Q6ZN84 652 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 B3GNT8Q7Z7M8 397 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 CBARPQ8N350 705 aaPredicted RBP18.44■□□□□ 0.54
CLN3-241ENST00000635861 ATPAF2Q8N5M1 289 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 TTC9Q92623 222 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 SYN2Q92777 582 aaPredicted RBP18.44■□□□□ 0.54
CLN3-241ENST00000635861 CSPG4P5Q96PW8 444 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 TEX101Q9BY14 249 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 TMEM168Q9H0V1 697 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 CYP4F12Q9HCS2 524 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 TRNAU1APQ9NX07 287 aaKnown RBP18.44■□□□□ 0.54
CLN3-241ENST00000635861 MYO1AQ9UBC5 1043 aa18.44■□□□□ 0.54
CLN3-241ENST00000635861 SETXQ7Z333 2677 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 NVLO15381 856 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 HEXIM1O94992 359 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 KRT10P13645 584 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 IL1R2P27930 398 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 ZFP36L1Q07352 338 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 ARHGEF7Q14155 803 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 NR1I3Q14994 352 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 MARC1Q5VT66 337 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 SPECC1LQ69YQ0 1117 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 SPRED1Q7Z699 444 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 ZNF605Q86T29 641 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 NDUFAF2Q8N183 169 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 GPBAR1Q8TDU6 330 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 IQCDQ96DY2 449 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 DTD2Q96FN9 168 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 SCRN2Q96FV2 425 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 NSMCE3Q96MG7 304 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 CCNL2Q96S94 520 aaPredicted RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 LGR4Q9BXB1 951 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 GSDMCQ9BYG8 508 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 B3GNT4Q9C0J1 378 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 DPEP2Q9H4A9 486 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 MRPL40Q9NQ50 206 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.43■□□□□ 0.54
CLN3-241ENST00000635861 LRIT1Q9P2V4 623 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 IP6K2Q9UHH9 426 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 ATXN7L1Q9ULK2 861 aaPredicted RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 PPIL1Q9Y3C6 166 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 PCDHGC4Q9Y5F7 938 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 TENM4Q6N022 2769 aa18.43■□□□□ 0.54
CLN3-241ENST00000635861 ASH1LQ9NR48 2969 aaKnown RBP18.43■□□□□ 0.54
CLN3-241ENST00000635861 A0A1W2PQJ5 194 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 CASC3O15234 703 aaKnown RBP18.42■□□□□ 0.54
CLN3-241ENST00000635861 JMJD7P0C870 316 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 RARAP10276 462 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 CCNB1P14635 433 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 AMPD1P23109 780 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 SLC5A2P31639 672 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 ILF3Q12906 894 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLN3-241ENST00000635861 TCEA2Q15560 299 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 SMTNL2Q2TAL5 461 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 KCTD16Q68DU8 428 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 NYAP1Q6ZVC0 841 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 C17orf82Q86X59 251 aaPredicted RBP18.42■□□□□ 0.54
CLN3-241ENST00000635861 PDCD6IPQ8WUM4 868 aaKnown RBP18.42■□□□□ 0.54
CLN3-241ENST00000635861 HSPH1Q92598 858 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 MCCC1Q96RQ3 725 aaPredicted RBP18.42■□□□□ 0.54
CLN3-241ENST00000635861 NOD2Q9HC29 1040 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 HAUS2Q9NVX0 235 aa18.42■□□□□ 0.54
CLN3-241ENST00000635861 PMS2P1A4D2B8 440 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 B4DGG1 531 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 SERPINC1P01008 464 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 MMP13P45452 471 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 DPTQ07507 201 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 NR1D2Q14995 579 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 TDRD12Q587J7 1177 aaKnown RBP18.41■□□□□ 0.54
CLN3-241ENST00000635861 ARMC12Q5T9G4 340 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 USP45Q70EL2 814 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 ZNF438Q7Z4V0 828 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 HEATR4Q86WZ0 1026 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 TP53INP2Q8IXH6 220 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 RAVER1Q8IY67 606 aaKnown RBP18.41■□□□□ 0.54
CLN3-241ENST00000635861 PGBD5Q8N414 524 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 NAP1L5Q96NT1 182 aaPredicted RBP18.41■□□□□ 0.54
CLN3-241ENST00000635861 CMKLR1Q99788 373 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 FRMD8Q9BZ67 464 aaPredicted RBP18.41■□□□□ 0.54
CLN3-241ENST00000635861 FOXP3Q9BZS1 431 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 CARS2Q9HA77 564 aaKnown RBP18.41■□□□□ 0.54
CLN3-241ENST00000635861 PCDH18Q9HCL0 1135 aa18.41■□□□□ 0.54
CLN3-241ENST00000635861 ETNK2Q9NVF9 386 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms