RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FGF1P05230 155 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 NCF1P14598 390 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 KPNA1P52294 538 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 ACTR3P61158 418 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SMAD3P84022 425 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 ARF5P84085 180 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SLC34A1Q06495 639 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SULT2A1Q06520 285 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SMARCB1Q12824 385 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 ADGRF1Q5T601 910 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 ATXN7L2Q5T6C5 722 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 KLC3Q6P597 504 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 ACAD11Q709F0 780 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 WFDC5Q8TCV5 224 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SLC26A7Q8TE54 656 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SCG3Q8WXD2 468 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 USP13Q92995 863 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 TMEM169Q96HH4 297 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 PSKH2Q96QS6 385 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 MGME1Q9BQP7 344 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 TM6SF2Q9BZW4 377 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 C1orf21Q9H246 121 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 STOML1Q9UBI4 398 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SEPT3Q9UH03 358 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 CDH22Q9UJ99 828 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 PTGDR2Q9Y5Y4 395 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 A8MX80 341 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 UBXN8O00124 270 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 TBL1XO60907 577 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 RPP40O75818 363 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 PRAMEF12O95522 483 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 NDST3O95803 873 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 CCL5P13501 91 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 HLA-DPA1P20036 260 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 GKP32189 559 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 ELF1P32519 619 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 PKNOX1P55347 436 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SEMG2Q02383 582 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 IKBKEQ14164 716 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 SLC39A5Q6ZMH5 540 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 LRRC74BQ6ZQY2 392 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 NET1Q7Z628 596 aaPredicted RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 TMEM150AQ86TG1 271 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 CUZD1Q86UP6 607 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 C2orf15Q8WU43 125 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 FATE1Q969F0 183 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 RCN3Q96D15 328 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 TRIB3Q96RU7 358 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 GIMAP2Q9UG22 337 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 AFF4Q9UHB7 1163 aaKnown RBP10.63□□□□□ -0.71
CUX1-221ENST00000622516 RAI2Q9Y5P3 530 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 USP34Q70CQ2 3546 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 MYOFQ9NZM1 2061 aa10.63□□□□□ -0.71
CUX1-221ENST00000622516 ANKRD36A6QL64 1941 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 KDELR3O43731 214 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CD160O95971 181 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 GNRH1P01148 92 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 LMNAP02545 664 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 ATP5BP06576 529 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 ACRP10323 421 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 MYL4P12829 197 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CTPS1P17812 591 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 SP100P23497 879 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 ITGB8P26012 769 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PRKAA2P54646 552 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PFKPQ01813 784 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 NSUN2Q08J23 767 aaKnown RBP eCLIP10.62□□□□□ -0.71
CUX1-221ENST00000622516 OR4D1Q15615 310 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PFKFB4Q16877 469 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 C6orf163Q5TEZ5 329 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CXorf57Q6NSI4 855 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 KBTBD2Q8IY47 623 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PIANPQ8IYJ0 282 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 DNAJC9Q8WXX5 260 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ESAMQ96AP7 390 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 NSUN5Q96P11 429 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 NPAS2Q99743 824 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CFHR5Q9BXR6 569 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ZNF334Q9HCZ1 680 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 PAK6Q9NQU5 681 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 STX18Q9P2W9 335 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 IKZF3Q9UKT9 509 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ARHGAP26Q9UNA1 814 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 RPL26L1Q9UNX3 145 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 COPG1Q9Y678 874 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 NRG2O14511 850 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 NVLO15381 856 aaKnown RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 CLDN11O75508 207 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ABLIM3O94929 683 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 CXCL10P02778 98 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ENO3P13929 434 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 TCN1P20061 433 aaPredicted RBP10.62□□□□□ -0.71
CUX1-221ENST00000622516 PAX7P23759 505 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 APLP1P51693 650 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 NME5P56597 212 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 BTKQ06187 659 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 ACAP2Q15057 778 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 MRNIPQ6NTE8 343 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PSAPL1Q6NUJ1 521 aa10.62□□□□□ -0.71
CUX1-221ENST00000622516 PAQR3Q6TCH7 311 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms