RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TEX45Q8NA69 505 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 NEXN-AS1Q8NBZ9 246 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 C3orf49Q96BT1 292 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 SLITRK1Q96PX8 696 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 PPP1R10Q96QC0 940 aaKnown RBP5.26□□□□□ -1.57
VPS29-212ENST00000621131 CADM1Q9BY67 442 aaKnown RBP5.26□□□□□ -1.57
VPS29-212ENST00000621131 UPF3BQ9BZI7 483 aaKnown RBP5.26□□□□□ -1.57
VPS29-212ENST00000621131 ZNF700Q9H0M5 742 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 SEL1LQ9UBV2 794 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 KCND3Q9UK17 655 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 PCDHGB1Q9Y5G3 927 aa5.26□□□□□ -1.57
VPS29-212ENST00000621131 RPAP1Q9BWH6 1393 aaPredicted RBP5.26□□□□□ -1.57
VPS29-212ENST00000621131 ZNF532Q9HCE3 1301 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 LAMA4Q16363 1823 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 MKI67P46013 3256 aaKnown RBP5.25□□□□□ -1.57
VPS29-212ENST00000621131 ABHD14A-ACY1A0A1B0GW23 586 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ASAP2O43150 1006 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 GPAA1O43292 621 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 BBOX1O75936 387 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ZBTB11O95625 1053 aaPredicted RBP5.25□□□□□ -1.57
VPS29-212ENST00000621131 MMP10P09238 476 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ITGB8P26012 769 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ALDH1B1P30837 517 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ADD2P35612 726 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 HTR3AP46098 478 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 AMTP48728 403 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 NUDT6P53370 316 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 GSTO1P78417 241 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 DDR1Q08345 913 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 IZUMO4Q1ZYL8 232 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ZNF628Q5EBL2 1059 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 C9orf50Q5SZB4 431 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 TMEM268Q5VZI3 342 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 CCDC129Q6ZRS4 1044 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 RRAGAQ7L523 313 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 GALNT7Q86SF2 657 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 SERPINA11Q86U17 422 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ZNF589Q86UQ0 364 aaPredicted RBP5.25□□□□□ -1.57
VPS29-212ENST00000621131 CERS3Q8IU89 383 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 NEK1Q96PY6 1258 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 TRAPPC9Q96Q05 1148 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 RMDN3Q96TC7 470 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 CLPBQ9H078 707 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ALDH8A1Q9H2A2 487 aaPredicted RBP5.25□□□□□ -1.57
VPS29-212ENST00000621131 ZNF556Q9HAH1 456 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 TMLHEQ9NVH6 421 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 RAI14Q9P0K7 980 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 SMC3Q9UQE7 1217 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ATP6V1DQ9Y5K8 247 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 CCDC88AQ3V6T2 1871 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 LRRC37AA6NMS7 1700 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 KIAA1551Q9HCM1 1747 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 NRXN2Q9P2S2 1712 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 AKAP11Q9UKA4 1901 aa5.25□□□□□ -1.57
VPS29-212ENST00000621131 ZMYM6O95789 1325 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 C17orf100A8MU93 164 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 ACKR2O00590 384 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 LDHCP07864 332 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 HSPD1P10809 573 aaKnown RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 CYP4B1P13584 511 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 ACP5P13686 325 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 ARSAP15289 507 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 NAGAP17050 411 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 TM4SF1P30408 202 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 GYG1P46976 350 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 TDO2P48775 406 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 COMPP49747 757 aaPredicted RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 CLCNKBP51801 687 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 RPS6KA3P51812 740 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 CUL4AQ13619 759 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 C9orf57Q5W0N0 161 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 TANGO2Q6ICL3 276 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 NAA16Q6N069 864 aaPredicted RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.24□□□□□ -1.574e-10■■■■□ 25.2
VPS29-212ENST00000621131 WDR5BQ86VZ2 330 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 NR2C2APQ86WQ0 139 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 DZIP1Q86YF9 867 aaKnown RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 OR14A16Q8NHC5 309 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 NCOA7Q8NI08 942 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 GFM1Q96RP9 751 aaKnown RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 EYA3Q99504 573 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 NAPBQ9H115 298 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 IL25Q9H293 177 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 RNF41Q9H4P4 317 aaPredicted RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 PIH1D3Q9NQM4 214 aaKnown RBP5.24□□□□□ -1.57
VPS29-212ENST00000621131 PLSCR4Q9NRQ2 329 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 DACT1Q9NYF0 836 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 LRFN1Q9P244 771 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 UPB1Q9UBR1 384 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 TAF1P21675 1872 aa5.24□□□□□ -1.57
VPS29-212ENST00000621131 WDR19Q8NEZ3 1342 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 TIAM2Q8IVF5 1701 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 ERICH2A1L162 156 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 DDTLA6NHG4 134 aaPredicted RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 SRRM3A6NNA2 597 aaPredicted RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 SYN3O14994 580 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 DHX16O60231 1041 aaKnown RBP5.23□□□□□ -1.57
VPS29-212ENST00000621131 UFL1O94874 794 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 MBD4O95243 580 aa5.23□□□□□ -1.57
VPS29-212ENST00000621131 CLDN7O95471 211 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms