RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SMAD6	O43541	496 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	UGT1A9	O60656	530 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	PLIN3	O60664	434 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	DIAPH2	O60879	1101 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	H2AFY	O75367	372 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	GSR	P00390	522 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ALDOA	P04075	364 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ASL	P04424	464 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINE1	P05121	402 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ITGA2B	P08514	1039 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ALOX15	P16050	662 aa	Predicted RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	AOC1	P19801	751 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	MGAT1	P26572	445 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	NNMT	P40261	264 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CTSO	P43234	321 aa	Predicted RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	MAPK8	P45983	427 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	RGR	P47804	291 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CSNK1D	P48730	415 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	HTR4	Q13639	388 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	BMPR2	Q13873	1038 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	GEN1	Q17RS7	908 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	GRAMD4	Q6IC98	578 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CASC4	Q6P4E1	433 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	KDELC2	Q7Z4H8	507 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	C12orf40	Q86WS4	652 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	PIWIL2	Q8TC59	973 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	IFT43	Q96FT9	208 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CERS2	Q96G23	380 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	RPL10L	Q96L21	214 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	RPP25	Q9BUL9	199 aa	Known RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CEP44	Q9C0F1	390 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	NMUR2	Q9GZQ4	415 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	CXorf56	Q9H5V9	222 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	UGT1A7	Q9HAW7	530 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	UGT1A10	Q9HAW8	530 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	UGT1A8	Q9HAW9	530 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ZFAT	Q9P243	1243 aa		11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.74	□□□□□ -0.53
VRK3-223	ENST00000601341	BRWD1	Q9NSI6	2320 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	DOCK8	Q8NF50	2099 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	FAM237B	A0A1B0GVD1	139 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	LOC285095	A0A1B0GVY8	99 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	MBTPS2	O43462	519 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	TIMM44	O43615	452 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	GJB3	O75712	270 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	SRC	P12931	536 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	FOSL2	P15408	326 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	GM2A	P17900	193 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	SP100	P23497	879 aa	Predicted RBP	11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	SPR	P35270	261 aa	Predicted RBP	11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	HK2	P52789	917 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	AP1S1	P61966	158 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	IHH	Q14623	411 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	GAB4	Q2WGN9	574 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	ITPRIPL2	Q3MIP1	535 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	TMEM215	Q68D42	235 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	DENND5A	Q6IQ26	1287 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	NCEH1	Q6PIU2	408 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341		Q7L0L9	218 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	RNF135	Q8IUD6	432 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	FEM1C	Q96JP0	617 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	CIPC	Q9C0C6	399 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	BRD9	Q9H8M2	597 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	GTSE1	Q9NYZ3	720 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	TAGLN3	Q9UI15	199 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	MID2	Q9UJV3	735 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	SLC8A2	Q9UPR5	921 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	C5orf42	Q9H799	3197 aa		11.73	□□□□□ -0.53
VRK3-223	ENST00000601341	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	KLHL2	O95198	593 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	IGSF6	O95976	241 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	MPO	P05164	745 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	APOA4	P06727	396 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	TPH1	P17752	444 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	HLA-DPA1	P20036	260 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	GJA4	P35212	333 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	EIF2D	P41214	584 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	SLC6A11	P48066	632 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	POLD2	P49005	469 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	STK19	P49842	368 aa	Predicted RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINB8	P50452	374 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	VASP	P50552	380 aa	Predicted RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	LIMK2	P53671	638 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	CSE1L	P55060	971 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	SNRPD1	P62314	119 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	CRADD	P78560	199 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	PDE1C	Q14123	709 aa	Predicted RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	EIF4H	Q15056	248 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	DLG2	Q15700	870 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	FASTKD1	Q53R41	847 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	DGKK	Q5KSL6	1271 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	CERCAM	Q5T4B2	595 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	PCDH20	Q8N6Y1	951 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	OR6Y1	Q8NGX8	325 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	PPP4R1	Q8TF05	950 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	SREK1	Q8WXA9	508 aa	Known RBP	11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	HLA-C	Q95604	372 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	MECR	Q9BV79	373 aa		11.72	□□□□□ -0.53
VRK3-223	ENST00000601341	CCDC106	Q9BWC9	280 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms