RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	KCTD16	Q68DU8	428 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	CRTC1	Q6UUV9	634 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	KDELC1	Q6UW63	502 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	HSD11B1L	Q7Z5J1	315 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	PTAR1	Q7Z6K3	402 aa	Predicted RBP	8.8	□□□□□ -1
SSBP4-208	ENST00000600628	TSPAN33	Q86UF1	283 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	GATAD2A	Q86YP4	633 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	RFX6	Q8HWS3	928 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	CHCHD4	Q8N4Q1	142 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	PNPLA1	Q8N8W4	532 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	CCNY	Q8ND76	341 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	CCDC112	Q8NEF3	446 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	OR4C6	Q8NH72	309 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	SCARF2	Q96GP6	870 aa	Predicted RBP	8.8	□□□□□ -1
SSBP4-208	ENST00000600628	ZNF830	Q96NB3	372 aa	Predicted RBP	8.8	□□□□□ -1
SSBP4-208	ENST00000600628	SMIM14	Q96QK8	99 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	VAT1	Q99536	393 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	APOO	Q9BUR5	198 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	C1QTNF7	Q9BXJ2	289 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	MAK16	Q9BXY0	300 aa	Known RBP	8.8	□□□□□ -1
SSBP4-208	ENST00000600628	TEX101	Q9BY14	249 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	OSBPL8	Q9BZF1	889 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	GLOD4	Q9HC38	313 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	APOBEC2	Q9Y235	224 aa	Known RBP	8.8	□□□□□ -1
SSBP4-208	ENST00000600628	NEUROG3	Q9Y4Z2	214 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	PCDHGA1	Q9Y5H4	931 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	ACACA	Q13085	2346 aa		8.8	□□□□□ -1
SSBP4-208	ENST00000600628	CHD6	Q8TD26	2715 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	LMO7DN	F2Z398	122 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628		K7ESM1	405 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	TPP1	O14773	563 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	MTSS1	O43312	755 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	GCAT	O75600	419 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	EPO	P01588	193 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	C1S	P09871	688 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ACP1	P24666	158 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ACADVL	P49748	655 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	AP1B1	Q10567	949 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	MSLN	Q13421	630 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	PDE1C	Q14123	709 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	NFATC4	Q14934	902 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	SMAD1	Q15797	465 aa	Known RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	QPCT	Q16769	361 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ALG11	Q2TAA5	492 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	INAVA	Q3KP66	663 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	AADACL2	Q6P093	401 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	PNCK	Q6P2M8	343 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	RFLNA	Q6ZTI6	216 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	NYAP1	Q6ZVC0	841 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628		Q6ZVL8	140 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	KIAA1328	Q86T90	577 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	SYCE1	Q8N0S2	351 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ZNF567	Q8N184	647 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	CACTIN-AS1	Q8N1I8	211 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	TXLNB	Q8N3L3	684 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	SDR16C5	Q8N3Y7	309 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ZNF548	Q8NEK5	533 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	ACTL9	Q8TC94	416 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	TFB1M	Q8WVM0	346 aa	Known RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	P3H4	Q92791	437 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	GATA6	Q92908	595 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	COX14	Q96I36	57 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	PDLIM2	Q96JY6	352 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	BOC	Q9BWV1	1114 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	FRMD8	Q9BZ67	464 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	CLPB	Q9H078	707 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	TCEAL2	Q9H3H9	227 aa	Predicted RBP	8.79	□□□□□ -1
SSBP4-208	ENST00000600628	PCDH9	Q9HC56	1237 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	NLGN3	Q9NZ94	848 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	CHKB	Q9Y259	395 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	MSRB2	Q9Y3D2	182 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628	PKD1L2	Q7Z442	2459 aa		8.79	□□□□□ -1
SSBP4-208	ENST00000600628		A0A0U1RQS6	177 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	MACROD2	A1Z1Q3	448 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	TMEM202	A6NGA9	273 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	MT-CYB	P00156	380 aa	Predicted RBP	8.78	□□□□□ -1
SSBP4-208	ENST00000600628	ALPI	P09923	528 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	CYP2A6	P11509	494 aa	Predicted RBP	8.78	□□□□□ -1
SSBP4-208	ENST00000600628	CKMT1A	P12532	417 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	TNNT1	P13805	278 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	TSHR	P16473	764 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	XPA	P23025	273 aa	Predicted RBP	8.78	□□□□□ -1
SSBP4-208	ENST00000600628	NFKBIA	P25963	317 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	ADRA1A	P35348	466 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	ETV3	P41162	512 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	CD86	P42081	329 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	HK3	P52790	923 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	DYNLT1	P63172	113 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	OTUD4	Q01804	1114 aa	Known RBP	8.78	□□□□□ -1
SSBP4-208	ENST00000600628	ILK	Q13418	452 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	CAMK2B	Q13554	666 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	PTK2B	Q14289	1009 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	LLGL1	Q15334	1064 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	ZFYVE27	Q5T4F4	411 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	CFAP58	Q5T655	872 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	HENMT1	Q5T8I9	393 aa	Known RBP	8.78	□□□□□ -1
SSBP4-208	ENST00000600628	MEI1	Q5TIA1	1274 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	LRRC66	Q68CR7	880 aa		8.78	□□□□□ -1
SSBP4-208	ENST00000600628	LVRN	Q6Q4G3	990 aa		8.78	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms