RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ACBD5Q5T8D3 534 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 ERAP2Q6P179 960 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 OGFOD3Q6PK18 319 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 LVRNQ6Q4G3 990 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 LIPIQ6XZB0 460 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 RFLNAQ6ZTI6 216 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 ARCQ7LC44 396 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 DTX1Q86Y01 620 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 NRROSQ86YC3 692 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 FAM114A1Q8IWE2 563 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 PAF1Q8N7H5 531 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 NTAN1Q96AB6 310 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 CCDC74BQ96LY2 380 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 LRRC19Q9H756 370 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 CARS2Q9HA77 564 aaKnown RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 APPL1Q9UKG1 709 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 FZD10Q9ULW2 581 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 PRRC2CQ9Y520 2896 aaKnown RBP8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 STAB1Q9NY15 2570 aa8.67□□□□□ -1.02
SHKBP1-220ENST00000599716 IGHV5-10-1A0A0J9YXX1 117 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TCRBV5S1A1TA0A578 114 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PRSS38A1L453 326 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 GOLGA6CA6NDK9 693 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 GOLGA6BA6NDN3 693 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ZSCAN5CA6NGD5 496 aaPredicted RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM110-MUSTN1A8MSY1 372 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 DFFAO00273 331 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 CACNB4O00305 520 aaPredicted RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PRAMEF11O60813 436 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ECEL1O95672 775 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ELFN1P0C7U0 828 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 GOLGA6DP0CG33 693 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 FGF3P11487 239 aaPredicted RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 SFTPCP11686 197 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 CSF2RBP32927 897 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 NSFP46459 744 aaKnown RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 GNPDA1P46926 289 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 KIAA1024LP59773 190 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TPI1P60174 286 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 UBE2HP62256 183 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 FOXK1P85037 733 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ACOX1Q15067 660 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 KRT31Q15323 416 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 CLEC16AQ2KHT3 1053 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PARP15Q460N3 678 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 DNAJC24Q6P3W2 148 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 DOK6Q6PKX4 331 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 SLC30A9Q6PML9 568 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 MON1BQ7L1V2 547 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 SRLQ86TD4 932 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TRIM74Q86UV6 250 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ARHGAP12Q8IWW6 846 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 UNC5BQ8IZJ1 945 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 UMODL1-AS1Q8N2C9 162 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 NPWQ8N729 165 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ZDHHC1Q8WTX9 485 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PDCD6IPQ8WUM4 868 aaKnown RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ART4Q93070 314 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PEBP4Q96S96 227 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 KCTD15Q96SI1 283 aaPredicted RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 CMKLR1Q99788 373 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TRIM7Q9C029 511 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 CLSTN2Q9H4D0 955 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 DHX35Q9H5Z1 703 aaKnown RBP8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 WDR26Q9H7D7 661 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 OCIAD1Q9NX40 245 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 GOLGA6AQ9NYA3 693 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TAS2R14Q9NYV8 317 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 B4GALT6Q9UBX8 382 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PCSK1NQ9UHG2 260 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 ACSL6Q9UKU0 697 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 PCDHB11Q9Y5F2 797 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 B3GALT1Q9Y5Z6 326 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 DGKBQ9Y6T7 804 aa8.66□□□□□ -1.02
SHKBP1-220ENST00000599716 TACC2O95359 2948 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 A0A1B0GTL3 188 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CXorf51AA0A1B0GTR3 108 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 RHPN2P1A8MT19 583 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 TMCO5BA8MYB1 307 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 TOR1BO14657 336 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PPM1DO15297 605 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 DUX1O43812 170 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PALMO75781 387 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 EML2O95834 649 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ITGB2P05107 769 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 FGF1P05230 155 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 PRKAR1AP10644 381 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CCNB1P14635 433 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 LIFP15018 202 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 LHCGRP22888 699 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CD1CP29017 333 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SERPINA4P29622 427 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ETV3P41162 512 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SCNN1BP51168 640 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 ZNF143P52747 638 aaPredicted RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 YBEYP58557 167 aaPredicted RBP8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 BCL2L1Q07817 233 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SYCP1Q15431 976 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 CNGA3Q16281 694 aa8.65□□□□□ -1.02
SHKBP1-220ENST00000599716 SNAP47Q5SQN1 464 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms