RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DDX3XO00571 662 aaKnown RBP eCLIP13.63□□□□□ -0.23
TRIM28-211ENST00000597968 NOBOXO60393 691 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 PEX11BO96011 259 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 JMJD7P0C870 316 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 CCNB1P14635 433 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 VIPR1P32241 457 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 UGT1A5P35504 534 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 GPR3P46089 330 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 CCL7P80098 99 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 DPTQ07507 201 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 ILF3Q12906 894 aaKnown RBP eCLIP13.63□□□□□ -0.23
TRIM28-211ENST00000597968 CLN3Q13286 438 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 ARHGEF7Q14155 803 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 ACOX1Q15067 660 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 ZNF438Q7Z4V0 828 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 SPRED1Q7Z699 444 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 FATE1Q969F0 183 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 NUS1Q96E22 293 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 DTD2Q96FN9 168 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 MCCC1Q96RQ3 725 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-211ENST00000597968 DPYSL5Q9BPU6 564 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 EPB41L5Q9HCM4 733 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 AKAP7Q9P0M2 348 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-211ENST00000597968 SEPT10Q9P0V9 454 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 SIRPGQ9P1W8 387 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 LRIT1Q9P2V4 623 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 B4GALT6Q9UBX8 382 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 LCMT1Q9UIC8 334 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 RABGEF1Q9UJ41 708 aa13.63□□□□□ -0.23
TRIM28-211ENST00000597968 GCN1Q92616 2671 aaKnown RBP13.62□□□□□ -0.23
TRIM28-211ENST00000597968 ATMINO43313 823 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-211ENST00000597968 MAFKO60675 156 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 HEXIM1O94992 359 aaKnown RBP13.62□□□□□ -0.23
TRIM28-211ENST00000597968 CPP00450 1065 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 PRB1P04280 392 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 LIPCP11150 499 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 ZNF30P17039 623 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 GM2AP17900 193 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 SLC5A2P31639 672 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 ZNF165P49910 485 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 SQSTM1Q13501 440 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 NR1I3Q14994 352 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 MARC1Q5VT66 337 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 SPECC1LQ69YQ0 1117 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 ARHGAP36Q6ZRI8 547 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 USP45Q70EL2 814 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 ATPAF2Q8N5M1 289 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 MED8Q96G25 268 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 NAP1L5Q96NT1 182 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-211ENST00000597968 CSPG4P5Q96PW8 444 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 TMEM168Q9H0V1 697 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 DPEP2Q9H4A9 486 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 SYNDIG1Q9H7V2 258 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 CYP4F12Q9HCS2 524 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 IP6K2Q9UHH9 426 aa13.62□□□□□ -0.23
TRIM28-211ENST00000597968 LRP4O75096 1905 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 HGSO14964 777 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 CPNE6O95741 557 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 ITGB2P05107 769 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 IVLP07476 585 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 PLA2G2AP14555 144 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 MMP13P45452 471 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TPM4P67936 248 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TRA2AQ13595 282 aaKnown RBP eCLIP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 CNGA3Q16281 694 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 ARMC12Q5T9G4 340 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TMEM164Q5U3C3 297 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 ALG1LQ6GMV1 187 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TIGD7Q6NT04 549 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 FOXR1Q6PIV2 292 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 ZNF765Q7L2R6 523 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 B3GNT8Q7Z7M8 397 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 PIM3Q86V86 326 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 SLITRK4Q8IW52 837 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TEX26Q8N6G2 289 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 FAM71BQ8TC56 605 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 SCARF2Q96GP6 870 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 FRMD8Q9BZ67 464 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 TRIM7Q9C029 511 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 POLR1EQ9GZS1 481 aaKnown RBP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.61□□□□□ -0.23
TRIM28-211ENST00000597968 SLC17A4Q9Y2C5 497 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 LOXL2Q9Y4K0 774 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 PCDHGC4Q9Y5F7 938 aa13.61□□□□□ -0.23
TRIM28-211ENST00000597968 B8ZZF3 427 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 PGLSO95336 258 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 PRKCGP05129 697 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 CEACAM5P06731 702 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 RARAP10276 462 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 SFTPCP11686 197 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 CA4P22748 312 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 IL1R2P27930 398 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 RP1P56715 2156 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 CDK3Q00526 305 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 B4GALNT1Q00973 533 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 LRP8Q14114 963 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 HADHQ16836 314 aaKnown RBP13.6□□□□□ -0.23
TRIM28-211ENST00000597968 HEATR4Q86WZ0 1026 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 LGR4Q9BXB1 951 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms