RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 IRF4Q15306 451 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 SIX1Q15475 284 aaPredicted RBP25.79■■□□□ 1.72
TRIM28-204ENST00000594806 LONRF2Q1L5Z9 754 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 PARP6Q2NL67 630 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 P3H1Q32P28 736 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 LRRC66Q68CR7 880 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 ARHGEF18Q6ZSZ5 1173 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 OR13H1Q8NG92 308 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 CCDC110Q8TBZ0 833 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 ATG4AQ8WYN0 398 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 OXNAD1Q96HP4 312 aaPredicted RBP25.79■■□□□ 1.72
TRIM28-204ENST00000594806 MRGPRX2Q96LB1 330 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 GOLGA6AQ9NYA3 693 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 UBP1Q9NZI7 540 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 ZNF148Q9UQR1 794 aa25.79■■□□□ 1.72
TRIM28-204ENST00000594806 DRG1Q9Y295 367 aaKnown RBP25.79■■□□□ 1.72
TRIM28-204ENST00000594806 A0A1B0GTQ1 180 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 ATP1A1P05023 1023 aaKnown RBP25.78■■□□□ 1.72
TRIM28-204ENST00000594806 HLA-DPA1P20036 260 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 ACTN2P35609 894 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 CCT8P50990 548 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 PTSQ03393 145 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 FAM182AQ5T1J6 154 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 TSPAN33Q86UF1 283 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 NLRP8Q86W28 1048 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 SPATS2Q86XZ4 545 aaKnown RBP25.78■■□□□ 1.72
TRIM28-204ENST00000594806 CCHCR1Q8TD31 782 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 C1orf54Q8WWF1 131 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 NUS1Q96E22 293 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 DTD2Q96FN9 168 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 FSD1LQ9BXM9 530 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 MBNL1Q9NR56 388 aaKnown RBP25.78■■□□□ 1.72
TRIM28-204ENST00000594806 TM7SF3Q9NS93 570 aa25.78■■□□□ 1.72
TRIM28-204ENST00000594806 RGSL1A5PLK6 1076 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 PCDHGA12O60330 932 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 GM2AP17900 193 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 STC1P52823 247 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 GALNT3Q14435 633 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 UAP1L1Q3KQV9 507 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 ESRP1Q6NXG1 681 aaKnown RBP25.77■■□□□ 1.72
TRIM28-204ENST00000594806 KDELC2Q7Z4H8 507 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 HSD11B1LQ7Z5J1 315 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 TECPR1Q7Z6L1 1165 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 KLHDC8BQ8IXV7 354 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 NRSN1Q8IZ57 195 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 OSBPL9Q96SU4 736 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 SNX12Q9UMY4 172 aa25.77■■□□□ 1.72
TRIM28-204ENST00000594806 C1orf232A0A0U1RR37 186 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 SPTY2D1-AS1A0A0U1RR47 76 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 TM4SF5O14894 197 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 PSMD3O43242 534 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 PYGLP06737 847 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 HOXC4P09017 264 aaPredicted RBP25.76■■□□□ 1.71
TRIM28-204ENST00000594806 PSMB4P28070 264 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 TEAD1P28347 426 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 THOP1P52888 689 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 GNG11P61952 73 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 DPTQ07507 201 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 SLC1A5Q15758 541 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 CDKN3Q16667 212 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 DENND2CQ68D51 928 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 ZNF765Q7L2R6 523 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 IPMKQ8NFU5 416 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 OR2I1PQ8NGU4 316 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 ATL2Q8NHH9 583 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 TRABDQ9H4I3 376 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 IL21RQ9HBE5 538 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 HACD3Q9P035 362 aa25.76■■□□□ 1.71
TRIM28-204ENST00000594806 FNDC3AQ9Y2H6 1198 aaKnown RBP25.76■■□□□ 1.71
TRIM28-204ENST00000594806 FGF1P05230 155 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 TSHRP16473 764 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 TCP1P17987 556 aaKnown RBP25.75■■□□□ 1.71
TRIM28-204ENST00000594806 TRIM23P36406 574 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 ID4P47928 161 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 PDE1CQ14123 709 aaPredicted RBP25.75■■□□□ 1.71
TRIM28-204ENST00000594806 INPP5AQ14642 412 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 DBX2Q6ZNG2 339 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 Q6ZVL8 140 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 SLC22A18ASQ8N1D0 253 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 ACTRT1Q8TDG2 376 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 CDH19Q9H159 772 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 ZFYVE1Q9HBF4 777 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 RAD18Q9NS91 495 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 PKD2L2Q9NZM6 624 aa25.75■■□□□ 1.71
TRIM28-204ENST00000594806 CLDN7O95471 211 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 ATXN1LP0C7T5 689 aaKnown RBP25.74■■□□□ 1.71
TRIM28-204ENST00000594806 HTR1BP28222 390 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 ETV3P41162 512 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 GDF10P55107 478 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 SNX1Q13596 522 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 PTPRRQ15256 657 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 PNCKQ6P2M8 343 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 C4orf22Q6V702 233 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 RANBP10Q6VN20 620 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 PARGQ86W56 976 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 SMIM14Q96QK8 99 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 GORASP1Q9BQQ3 440 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 APOOQ9BUR5 198 aa25.74■■□□□ 1.71
TRIM28-204ENST00000594806 FEZ2Q9UHY8 353 aaPredicted RBP25.74■■□□□ 1.71
TRIM28-204ENST00000594806 PGRMC1O00264 195 aaKnown RBP25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms