RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 HOXC8P31273 242 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 SLC7A2P52569 658 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 TUBA4AP68366 448 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 OVOS1Q6IE37 1185 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 KRT80Q6KB66 452 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 CD300LGQ6UXG3 332 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 SLC22A9Q8IVM8 553 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 RYBPQ8N488 228 aaPredicted RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 FAM110BQ8TC76 370 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 FNDC8Q8TC99 324 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 HMCESQ96FZ2 354 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 IMP4Q96G21 291 aaKnown RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 DUS3LQ96G46 650 aaKnown RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 RMND5BQ96G75 393 aaPredicted RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 BIRC8Q96P09 236 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 AGO3Q9H9G7 860 aaKnown RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 DUS2Q9NX74 493 aaKnown RBP16.53■□□□□ 0.24
LIG1-206ENST00000594067 TMEM181Q9P2C4 612 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 GIMAP2Q9UG22 337 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 CLEC11AQ9Y240 323 aa16.53■□□□□ 0.24
LIG1-206ENST00000594067 NYNRINQ9P2P1 1898 aaKnown RBP16.52■□□□□ 0.24
LIG1-206ENST00000594067 CHRNA1P02708 482 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 ITGB1P05556 798 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 HTR7P34969 479 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 STT3AP46977 705 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 CDH15P55291 814 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 TRAP1Q12931 704 aaKnown RBP16.52■□□□□ 0.24
LIG1-206ENST00000594067 SLC14A2Q15849 920 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 ZNF678Q5SXM1 525 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 PIK3R6Q5UE93 754 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 DHRS4L2Q6PKH6 230 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 LARP4Q71RC2 724 aaKnown RBP eCLIP16.52■□□□□ 0.24
LIG1-206ENST00000594067 BEND5Q7L4P6 421 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 FUNDC1Q8IVP5 155 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 SCN4BQ8IWT1 228 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 OR52K2Q8NGK3 314 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 LRCH3Q96II8 777 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 ANKRD60Q9BZ19 345 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 IL1RL2Q9HB29 575 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 ARNT2Q9HBZ2 717 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 CNOT6Q9ULM6 557 aaKnown RBP16.52■□□□□ 0.24
LIG1-206ENST00000594067 PTGDR2Q9Y5Y4 395 aa16.52■□□□□ 0.24
LIG1-206ENST00000594067 FAM155AB1AL88 458 aaPredicted RBP16.52■□□□□ 0.23
LIG1-206ENST00000594067 TIPRLO75663 272 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 ALDOCP09972 364 aaKnown RBP16.52■□□□□ 0.23
LIG1-206ENST00000594067 HAPLN1P10915 354 aaPredicted RBP16.52■□□□□ 0.23
LIG1-206ENST00000594067 CKMT2P17540 419 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 UNC50Q53HI1 259 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 NHSL2Q5HYW2 709 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 SDHAF4Q5VUM1 108 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 ISCA2Q86U28 154 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 SPATA2LQ8IUW3 424 aaPredicted RBP16.52■□□□□ 0.23
LIG1-206ENST00000594067 BBS5Q8N3I7 341 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 FIBCD1Q8N539 461 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 PPWD1Q96BP3 646 aaKnown RBP16.52■□□□□ 0.23
LIG1-206ENST00000594067 PTERQ96BW5 349 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 PPP1R14BQ96C90 147 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 PLEKHG4BQ96PX9 1271 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 OSER1Q9NX31 292 aa16.52■□□□□ 0.23
LIG1-206ENST00000594067 PPP6CO00743 305 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 S1PR4O95977 384 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 CYP11A1P05108 521 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 MLLT6P55198 1093 aaPredicted RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 PRAMEP78395 509 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 KIF19Q2TAC6 998 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 SAMD4BQ5PRF9 694 aaKnown RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 HM13Q8TCT9 377 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 C19orf60Q96EN9 201 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 CLK4Q9HAZ1 481 aaKnown RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 ATP13A1Q9HD20 1204 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 MRGBPQ9NV56 204 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 CROCCQ5TZA2 2017 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 DOCK3Q8IZD9 2030 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 LRRC14BA6NHZ5 514 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 TNFRSF10BO14763 440 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 CNTN5O94779 1100 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 MMP2P08253 660 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 RPL10P27635 214 aaKnown RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 RENBPP51606 427 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 STX1BP61266 288 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 TSPY1Q01534 308 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 GALNT1Q10472 559 aaPredicted RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 PTPRCAPQ14761 206 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 MARC1Q5VT66 337 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 FAM45BPQ6NSW5 357 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 ZBTB49Q6ZSB9 765 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 RETREG3Q86VR2 466 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 DHFR2Q86XF0 187 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 GABPB2Q8TAK5 448 aaPredicted RBP16.51■□□□□ 0.23
LIG1-206ENST00000594067 FAM45AQ8TCE6 357 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 RSPH1Q8WYR4 309 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 PBXIP1Q96AQ6 731 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 AKTIPQ9H8T0 292 aa16.51■□□□□ 0.23
LIG1-206ENST00000594067 COL4A4P53420 1690 aaPredicted RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 C9JVG2 144 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 MGEA5O60502 916 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 BMP10O95393 424 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 GRIA3P42263 894 aa16.5■□□□□ 0.23
LIG1-206ENST00000594067 ACBD5Q5T8D3 534 aaPredicted RBP16.5■□□□□ 0.23
LIG1-206ENST00000594067 GDF6Q6KF10 455 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms