RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 B4GAT1O43505 415 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 SOCS5O75159 536 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 CCNB1P14635 433 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 CNGA3Q16281 694 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 STX1AQ16623 288 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 XKR5Q6UX68 686 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 ZNF438Q7Z4V0 828 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 NRROSQ86YC3 692 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 CBARPQ8N350 705 aaPredicted RBP21.09■□□□□ 0.97
VPS53-216ENST00000574029 KIAA1524Q8TCG1 905 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 USP7Q93009 1102 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 NUS1Q96E22 293 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 TEX101Q9BY14 249 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 TRIM7Q9C029 511 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 SEMA6CQ9H3T2 930 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 SPATS2LQ9NUQ6 558 aaKnown RBP21.09■□□□□ 0.97
VPS53-216ENST00000574029 KCTD5Q9NXV2 234 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 SEPT10Q9P0V9 454 aa21.09■□□□□ 0.97
VPS53-216ENST00000574029 ARHGEF17Q96PE2 2063 aaPredicted RBP21.09■□□□□ 0.97
VPS53-216ENST00000574029 TTC24A2A3L6 582 aaPredicted RBP21.08■□□□□ 0.97
VPS53-216ENST00000574029 LRCH4O75427 683 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 PEX11BO96011 259 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 FUCA1P04066 466 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 ITGB2P05107 769 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 CEACAM5P06731 702 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 KRT10P13645 584 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 CR2P20023 1033 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 HSPA9P38646 679 aaKnown RBP21.08■□□□□ 0.97
VPS53-216ENST00000574029 NR1D2Q14995 579 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 DTX1Q86Y01 620 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 B3GNT4Q9C0J1 378 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 CARS2Q9HA77 564 aaKnown RBP21.08■□□□□ 0.97
VPS53-216ENST00000574029 PHPT1Q9NRX4 125 aaPredicted RBP21.08■□□□□ 0.97
VPS53-216ENST00000574029 FOXJ2Q9P0K8 574 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 PCDHGC4Q9Y5F7 938 aa21.08■□□□□ 0.97
VPS53-216ENST00000574029 A0A1W2PQC6 194 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 C9orf172C9J069 976 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 AGRPO00253 132 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 SLC28A2O43868 658 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 HEXIM1O94992 359 aaKnown RBP21.07■□□□□ 0.96
VPS53-216ENST00000574029 CPNE6O95741 557 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 FGF1P05230 155 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 GZMAP12544 262 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 VIPR1P32241 457 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 MAPK10P53779 464 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 MAZP56270 477 aaKnown RBP21.07■□□□□ 0.96
VPS53-216ENST00000574029 C16orf72Q14CZ0 275 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 CLPPQ16740 277 aaPredicted RBP21.07■□□□□ 0.96
VPS53-216ENST00000574029 MAP9Q49MG5 647 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 PHF19Q5T6S3 580 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 PIM3Q86V86 326 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 HEATR4Q86WZ0 1026 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 ZFAND4Q86XD8 727 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 PGBD5Q8N414 524 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 NUDCD1Q96RS6 583 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 GSDMCQ9BYG8 508 aa21.07■□□□□ 0.96
VPS53-216ENST00000574029 FRMD8Q9BZ67 464 aaPredicted RBP21.07■□□□□ 0.96
VPS53-216ENST00000574029 TRNAU1APQ9NX07 287 aaKnown RBP21.07■□□□□ 0.96
VPS53-216ENST00000574029 LRRC53A6NM62 1247 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 CPP00450 1065 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 FTLP02792 175 aaPredicted RBP21.06■□□□□ 0.96
VPS53-216ENST00000574029 CD82P27701 267 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 OR1D5P58170 312 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 ILF3Q12906 894 aaKnown RBP eCLIP21.06■□□□□ 0.96
VPS53-216ENST00000574029 ZNF235Q14590 738 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 MANEAQ5SRI9 462 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 ZDHHC1Q8WTX9 485 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 DTD2Q96FN9 168 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 MGME1Q9BQP7 344 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 HAUS4Q9H6D7 363 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 ZWILCHQ9H900 591 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 RDH14Q9HBH5 336 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 TAAR2Q9P1P5 351 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 CNOT8Q9UFF9 292 aaKnown RBP21.06■□□□□ 0.96
VPS53-216ENST00000574029 PHTF1Q9UMS5 762 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 PCDHB11Q9Y5F2 797 aa21.06■□□□□ 0.96
VPS53-216ENST00000574029 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21.05■□□□□ 0.96
VPS53-216ENST00000574029 H3BRJ5 948 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 PYCARD-AS1I3L0S3 204 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 PSMD11O00231 422 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 LHCGRP22888 699 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 TEAD1P28347 426 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 PCK1P35558 622 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 ETV3P41162 512 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 CDK3Q00526 305 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 DPYSL2Q16555 572 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 ZNF574Q6ZN55 896 aaPredicted RBP21.05■□□□□ 0.96
VPS53-216ENST00000574029 ZNF571Q7Z3V5 609 aaPredicted RBP21.05■□□□□ 0.96
VPS53-216ENST00000574029 HSD11B1LQ7Z5J1 315 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 VASH2Q86V25 355 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 PDCD6IPQ8WUM4 868 aaKnown RBP21.05■□□□□ 0.96
VPS53-216ENST00000574029 PTCD2Q8WV60 388 aaKnown RBP21.05■□□□□ 0.96
VPS53-216ENST00000574029 EXTL1Q92935 676 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 CLMPQ9H6B4 373 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 NOD2Q9HC29 1040 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 AIPL1Q9NZN9 384 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 SUFUQ9UMX1 484 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 PCDHGA4Q9Y5G9 962 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 SCINQ9Y6U3 715 aa21.05■□□□□ 0.96
VPS53-216ENST00000574029 RHPN2P1A8MT19 583 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms