RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 KCTD16Q68DU8 428 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 ESRP1Q6NXG1 681 aaKnown RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 TECPR1Q7Z6L1 1165 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 GATAD2AQ86YP4 633 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 KLHDC8BQ8IXV7 354 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 OXR1Q8N573 874 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PAF1Q8N7H5 531 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 ATG4AQ8WYN0 398 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 EID2BQ96D98 161 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 MRGPRX2Q96LB1 330 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 SPATA13Q96N96 652 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 MLPHQ9BV36 600 aaPredicted RBP9.81□□□□□ -0.84
CLK3-220ENST00000567992 C1QTNF7Q9BXJ2 289 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 UBP1Q9NZI7 540 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 KLF15Q9UIH9 416 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 TRHDEQ9UKU6 1024 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PCOLCE2Q9UKZ9 415 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 DNPEPQ9ULA0 475 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PYCARDQ9ULZ3 195 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 SPO11Q9Y5K1 396 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 AKAP13Q12802 2813 aa9.81□□□□□ -0.84
CLK3-220ENST00000567992 PCNX2A6NKB5 2137 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ASPMQ8IZT6 3477 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 TDRD6O60522 2096 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 LOC285095A0A1B0GVY8 99 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 GOLGA6L9A6NEM1 432 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 GOLGA8CPA6NN73 597 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 TOR1BO14657 336 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 YKT6O15498 198 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 FLRT2O43155 660 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 LIASO43766 372 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 DFNA5O60443 496 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 SDC3O75056 442 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 CLDN7O95471 211 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PCCBP05166 539 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PTMAP06454 111 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 GIMD1P0DJR0 217 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 NME1P15531 152 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 ZNF30P17039 623 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 NFKBIAP25963 317 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PSMB4P28070 264 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ARRB1P49407 418 aaPredicted RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 NOVA1P51513 510 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 EPHB1P54762 984 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 WNT3AP56704 352 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 YPEL5P62699 121 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 BNIP3Q12983 259 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 MTM1Q13496 603 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 INPP5AQ14642 412 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ACOX1Q15067 660 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PCSK7Q16549 785 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PPM1JQ5JR12 505 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ANKRD20A2Q5SQ80 823 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ANKRD20A1Q5TYW2 823 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ANKRD20A3Q5VUR7 823 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PSAPL1Q6NUJ1 521 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 DARS2Q6PI48 645 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 MACC1Q6ZN28 852 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 Q6ZVL8 140 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PID1Q7Z2X4 250 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 DGLUCYQ7Z3D6 616 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 PARGQ86W56 976 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 DCP2Q8IU60 420 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 TTC13Q8NBP0 860 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 CCDC110Q8TBZ0 833 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 ANP32BQ92688 251 aaKnown RBP9.8□□□□□ -0.84
CLK3-220ENST00000567992 RTP4Q96DX8 246 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 NUS1Q96E22 293 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 IFT43Q96FT9 208 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 FAM153AQ9UHL3 310 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 RSPH14Q9UHP6 348 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 OR1A2Q9Y585 309 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 WDFY3Q8IZQ1 3526 aa9.8□□□□□ -0.84
CLK3-220ENST00000567992 C1orf232A0A0U1RR37 186 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 C5orf60A6NFR6 353 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ENC1O14682 589 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ZSCAN12O43309 604 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 PIAS2O75928 621 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 NDST3O95803 873 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 CSF2P04141 144 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 PIRTP0C851 137 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 CEACAM1P13688 526 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 TEAD1P28347 426 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ADRA1AP35348 466 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 TRIM23P36406 574 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 CHRNA4P43681 627 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 KIAA1024LP59773 190 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 DPTQ07507 201 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 MPP3Q13368 585 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 OLIG2Q13516 323 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ARHGEF7Q14155 803 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 NFATC4Q14934 902 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ZNF542PQ5EBM4 170 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 SIRPB2Q5JXA9 342 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 DENND2CQ68D51 928 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ITPRIPL1Q6GPH6 555 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 PNCKQ6P2M8 343 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ZNF765Q7L2R6 523 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 LYSMD3Q7Z3D4 306 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 KDELC2Q7Z4H8 507 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms