RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	FAM90A8P	A6NJQ4	464 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442		B4DGG1	531 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442		J3KR12	359 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442		K7ENM7	598 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	TNFRSF13B	O14836	293 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	CLTB	P09497	229 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	FAM90A13P	P0C7W8	464 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	FAM90A24P	P0C7X0	464 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	ZNF182	P17025	639 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	CDH2	P19022	906 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	MT3	P25713	68 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	GARS	P41250	739 aa	Known RBP	4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	HTR6	P50406	440 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	CLCN3	P51790	818 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	NLRP5	P59047	1200 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	CTTN	Q14247	550 aa	Known RBP	4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	CRYM	Q14894	314 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	RILPL1	Q5EBL4	403 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	C6orf141	Q5SZD1	244 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	FNBP1L	Q5T0N5	605 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	LINGO2	Q7L985	606 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	TRIB2	Q92519	343 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	SLITRK1	Q96PX8	696 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	FAM234A	Q9H0X4	552 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	SMARCAD1	Q9H4L7	1026 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	SLC28A3	Q9HAS3	691 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	GPR108	Q9NPR9	543 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	OR6C3	Q9NZP0	311 aa		4.56	□□□□□ -1.68
CHD9-215	ENST00000565442	hCG_1807616	A0A1W2PRN6	198 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	TMEM202	A6NGA9	273 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CD8B2	A6NJW9	211 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	TIMM23	O14925	209 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	RGS14	O43566	566 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	AHCYL1	O43865	530 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	GJB3	O75712	270 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SLC25A12	O75746	678 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NDUFB4	O95168	129 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CYC1	P08574	325 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NAGA	P17050	411 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	MCM3	P25205	808 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CHAT	P28329	748 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ACTN2	P35609	894 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	UBA7	P41226	1012 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	GALC	P54803	685 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CDH8	P55286	799 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	PRAME	P78395	509 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ADORA2A-AS1	P86434	159 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ST3GAL1	Q11201	340 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CUL4A	Q13619	759 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NEDD9	Q14511	834 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	WTAP	Q15007	396 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SHB	Q15464	509 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	USP41	Q3LFD5	358 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ZSCAN23	Q3MJ62	389 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	FSCB	Q5H9T9	825 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ANKRD54	Q6NXT1	300 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	TMEM154	Q6P9G4	183 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SARM1	Q6SZW1	724 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	C9orf47	Q6ZRZ4	202 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CHST9	Q7L1S5	443 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SHF	Q7M4L6	423 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SZRD1	Q7Z422	152 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SRBD1	Q8N5C6	995 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SCCPDH	Q8NBX0	429 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	OR14L1P	Q8NHC6	308 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ASB5	Q8WWX0	329 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NSUN4	Q96CB9	384 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ARHGEF26	Q96DR7	871 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	FAM120B	Q96EK7	910 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	RSRC1	Q96IZ7	334 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	SLC41A2	Q96JW4	573 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	TMEM68	Q96MH6	324 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	FAM110A	Q9BQ89	295 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	TMEM47	Q9BQJ4	181 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NUDT16L1	Q9BRJ7	211 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	RBM38	Q9H0Z9	239 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	CCDC68	Q9H2F9	335 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	NSMCE4A	Q9NXX6	385 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	ERVK-11	Q9UQG0	969 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	PTGDR2	Q9Y5Y4	395 aa		4.55	□□□□□ -1.68
CHD9-215	ENST00000565442	AGAP14	A8MT82	685 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	INAFM1	C9JVW0	142 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	PRSS44	E7EML9	344 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	VWA5A	O00534	786 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	NDUFS3	O75489	264 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	OR2C1	O95371	312 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	G6PD	P11413	515 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	POR	P16435	677 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	EIF2S3	P41091	472 aa	Known RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	GPS2	Q13227	327 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	LEXM	Q3ZCV2	418 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	DUSP28	Q4G0W2	176 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	CDON	Q4KMG0	1287 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	KRTAP5-4	Q6L8H1	288 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	B3GNT6	Q6ZMB0	384 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	CLEC17A	Q6ZS10	378 aa		4.54	□□□□□ -1.68
CHD9-215	ENST00000565442	MTSS1L	Q765P7	747 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms