RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 GMEB1Q9Y692 573 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ANKRD12Q6UB98 2062 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 SMIM35A0A1B0GVV1 85 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 PIP5K1BO14986 540 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 GJA5P36382 358 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 YAP1P46937 504 aaKnown RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 TUBA4AP68366 448 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 PPIL2Q13356 520 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 PTPRCAPQ14761 206 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 ACAP2Q15057 778 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 UNC50Q53HI1 259 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 ISCA2Q86U28 154 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 CMTR2Q8IYT2 770 aaKnown RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 HASPINQ8TF76 798 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 IRGQQ8WZA9 623 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 HDAC10Q969S8 669 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 PPP1R10Q96QC0 940 aaKnown RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 MID1IP1Q9NPA3 183 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 CCM2LQ9NUG4 571 aaPredicted RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 FAM155AB1AL88 458 aaPredicted RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 ANGPT2O15123 496 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 BMP10O95393 424 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 NCK1P16333 377 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 CD86P42081 329 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 MAGEA8P43361 318 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 MERTKQ12866 999 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 TFAP2DQ7Z6R9 452 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 CAMK1DQ8IU85 385 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 OR13J1Q8NGT2 312 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 DNAJB14Q8TBM8 379 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 FNDC8Q8TC99 324 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 DUS3LQ96G46 650 aaKnown RBP13.22□□□□□ -0.29
CLN3-210ENST00000563874 SMARCD1Q96GM5 515 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 PIF1Q9H611 641 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 NT5MQ9NPB1 228 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 ARMC1Q9NVT9 282 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 CMTM6Q9NX76 183 aa13.22□□□□□ -0.29
CLN3-210ENST00000563874 A0A087WXM4 84 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 A0A1B0GTL3 188 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 INPP4BO15327 924 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 ATE1O95260 518 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 LINC00032P0C843 101 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 LEPRP48357 1165 aaKnown RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 SLC5A3P53794 718 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PFKFB4Q16877 469 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 UGT3A2Q3SY77 523 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 FUT11Q495W5 492 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 GPR107Q5VW38 600 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 C14orf80Q86SX3 495 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 GPR180Q86V85 440 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 SLC22A9Q8IVM8 553 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 KLHDC8BQ8IXV7 354 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PTGR2Q8N8N7 351 aaPredicted RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 MIOSQ9NXC5 875 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 SCN4AP35499 1836 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 H3BMM5 538 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 FXYD1O00168 92 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 EI24O14681 340 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PSMA4P25789 261 aaKnown RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 AXLP30530 894 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 CASP2P42575 452 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 CLCN5P51795 746 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 ECT2LQ008S8 904 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PMS2P3Q13401 168 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 RABL3Q5HYI8 236 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 ZNF354CQ86Y25 554 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 CILP2Q8IUL8 1156 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PTCD2Q8WV60 388 aaKnown RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 VPS33AQ96AX1 596 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 TUBGCP3Q96CW5 907 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 PABPC5Q96DU9 382 aaKnown RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 YIPF2Q9BWQ6 316 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 OSBPL6Q9BZF3 934 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 NAA50Q9GZZ1 169 aaKnown RBP13.21□□□□□ -0.29
CLN3-210ENST00000563874 TMEM165Q9HC07 324 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 AGPAT4Q9NRZ5 378 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 TMLHEQ9NVH6 421 aa13.21□□□□□ -0.29
CLN3-210ENST00000563874 UBXN8O00124 270 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 GIPC1O14908 333 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 CDK14O94921 469 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 IL10P22301 178 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 FASP25445 335 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 LHX1P48742 406 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 ACADVLP49748 655 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 IHHQ14623 411 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 PLCL1Q15111 1095 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 RPS6KA2Q15349 733 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 CYP51A1Q16850 503 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 ELMSAN1Q6PJG2 1045 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 TRPC4APQ8TEL6 797 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 TWIST2Q8WVJ9 160 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 BIRC8Q96P09 236 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 TMEM209Q96SK2 561 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 GPATCH1Q9BRR8 931 aaKnown RBP13.21□□□□□ -0.3
CLN3-210ENST00000563874 CXorf21Q9HAI6 301 aa13.21□□□□□ -0.3
CLN3-210ENST00000563874 TTC3P53804 2025 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 A0A1W2PPW3 197 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 ARPC2O15144 300 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 GJB3O75712 270 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 HGFP14210 728 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms