RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 CPEB1Q9BZB8 566 aaKnown RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 NKX2-4Q9H2Z4 354 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 POPDC3Q9HBV1 291 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 POLR3BQ9NW08 1133 aaPredicted RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 RUVBL2Q9Y230 463 aaKnown RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 NOTCH4Q99466 2003 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 A0A0J9YYE9 177 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 HOXC11O43248 304 aaPredicted RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 H2AFYO75367 372 aaKnown RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 PIGNO95427 931 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 TRBC1P01850 177 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 RALBP11234 206 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 FDXRP22570 491 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 PRKAA2P54646 552 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 DLG1Q12959 904 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 MYLK3Q32MK0 819 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 GALNTL6Q49A17 601 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 PPP2R2DQ66LE6 453 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 LRRC8EQ6NSJ5 796 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 ZNF549Q6P9A3 640 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 ZYG11AQ6WRX3 759 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 ZCCHC23Q6ZST2 131 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 CRLF3Q8IUI8 442 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 NPAS3Q8IXF0 933 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 AHI1Q8N157 1196 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 FSTL5Q8N475 847 aaPredicted RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 FITM2Q8N6M3 262 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 RFWD2Q8NHY2 731 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 PPP1R14CQ8TAE6 165 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 TTC8Q8TAM2 541 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 ECHDC3Q96DC8 303 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 THOC1Q96FV9 657 aaKnown RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 LYSMD1Q96S90 227 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 C20orf27Q9GZN8 174 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 TNKS2Q9H2K2 1166 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 ACTR5Q9H9F9 607 aaPredicted RBP12.91□□□□□ -0.34
SNX1-211ENST00000560829 KCNK13Q9HB14 408 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 IGSF5Q9NSI5 407 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 MSRAQ9UJ68 235 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 PRDM4Q9UKN5 801 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 PPIL1Q9Y3C6 166 aa12.91□□□□□ -0.34
SNX1-211ENST00000560829 MIA3Q5JRA6 1907 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 DCTN3O75935 186 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 PGGT1BP53609 377 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 XIAPP98170 497 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 PEX6Q13608 980 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 DHCR24Q15392 516 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 CDKN3Q16667 212 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 FAM83EQ2M2I3 478 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 EML3Q32P44 896 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 CARD16Q5EG05 197 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 TBC1D1Q86TI0 1168 aaPredicted RBP12.9□□□□□ -0.34
SNX1-211ENST00000560829 PNPLA1Q8N8W4 532 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 GDPD5Q8WTR4 605 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 LPGAT1Q92604 370 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 NXNL1Q96CM4 212 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 EID2BQ96D98 161 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 RSPRY1Q96DX4 576 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 AARSD1Q9BTE6 412 aaKnown RBP12.9□□□□□ -0.34
SNX1-211ENST00000560829 MRPL46Q9H2W6 279 aaKnown RBP12.9□□□□□ -0.34
SNX1-211ENST00000560829 GPAMQ9HCL2 828 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 OXSMQ9NWU1 459 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 FKBPLQ9UIM3 349 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 VPS9D1Q9Y2B5 631 aa12.9□□□□□ -0.34
SNX1-211ENST00000560829 A0A1W2PQ67 120 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 CAPN8A6NHC0 703 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 TMEM114B3SHH9 223 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 WASH3PC4AMC7 463 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 ANKRD65E5RJM6 399 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 TK2O00142 265 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 TRIM13O60858 407 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 POP4O95707 220 aaKnown RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 CYP17A1P05093 508 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 LTA4HP09960 611 aaKnown RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 MYL2P10916 166 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 PMLP29590 882 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 GKP32189 559 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 MC4RP32245 332 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 SLC1A6P48664 564 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 CDKN2DP55273 166 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 ITGA9Q13797 1035 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 PTPRRQ15256 657 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 SPRED3Q2MJR0 410 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 SPDYAQ5MJ70 313 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 AGAP9Q5VTM2 703 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 TMEM184AQ6ZMB5 413 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 LYSMD3Q7Z3D4 306 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 SREK1Q8WXA9 508 aaKnown RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 ZNF641Q96N77 438 aaPredicted RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 ASB16Q96NS5 453 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 MRPL57Q9BQC6 102 aaKnown RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 SIKE1Q9BRV8 207 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 ZNF395Q9H8N7 513 aaPredicted RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 TRPV4Q9HBA0 871 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 DUS2Q9NX74 493 aaKnown RBP12.89□□□□□ -0.35
SNX1-211ENST00000560829 OBP2AQ9NY56 170 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 KCNK4Q9NYG8 393 aa12.89□□□□□ -0.35
SNX1-211ENST00000560829 CPSF2Q9P2I0 782 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms