RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 RPA4Q13156 261 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 ATP1A4Q13733 1029 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 GRM4Q14833 912 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 EFTUD2Q15029 972 aaKnown RBP eCLIP6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 MAPK6Q16659 721 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 CCDC14Q49A88 953 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 NANOGP8Q6NSW7 305 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 USP43Q70EL4 1123 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 ATP6V0D2Q8N8Y2 350 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 TNFRSF25Q93038 417 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 SHISA4Q96DD7 197 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 PTCHD1Q96NR3 888 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 RANBP9Q96S59 729 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 STRA6Q9BX79 667 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 RNF41Q9H4P4 317 aaPredicted RBP6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 PNPOQ9NVS9 261 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 TMOD2Q9NZR1 351 aa6.78□□□□□ -1.32
TSPAN3-209ENST00000560715 COL1A1P02452 1464 aaPredicted RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 IFNL4K9M1U5 179 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 BTN3A1O00481 513 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TSPAN3O60637 253 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 GUCY1B2O75343 617 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ITGA5P08648 1049 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HLA-DPA1P20036 260 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 CYP7A1P22680 504 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 AVPR2P30518 371 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RFC4P35249 363 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PBX2P40425 430 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ERFP50548 548 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 CDK16Q00536 496 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 DNAL1Q4LDG9 190 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ARL6IP4Q66PJ3 421 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TWF2Q6IBS0 349 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HHIPL2Q6UWX4 724 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 FAM129CQ86XR2 697 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ELMOD1Q8N336 334 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PDZD8Q8NEN9 1154 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RFWD2Q8NHY2 731 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ACMSDQ8TDX5 336 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 SNF8Q96H20 258 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MAP6Q96JE9 813 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MSLNLQ96KJ4 702 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 SPATA13Q96N96 652 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HAUS8Q9BT25 410 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MTMR12Q9C0I1 747 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 SNX25Q9H3E2 840 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 VPS51Q9UID3 782 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RAB26Q9ULW5 256 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 DTNAQ9Y4J8 743 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TNRC6CQ9HCJ0 1690 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 DLEC1Q9Y238 1755 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 LOC100289279A0A1B0GTE1 492 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PRAMEF25A6NGN4 478 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 CENPBD1B2RD01 187 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 H3BNX3 289 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RAB27BO00194 218 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TADA2AO75478 443 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 CSDE1O75534 798 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RSL1D1O76021 490 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HSPA1AP0DMV8 641 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HSPA1BP0DMV9 641 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MTHFD2P13995 350 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ZNF23P17027 643 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 CD6P30203 668 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TAGLN2P37802 199 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ALDH3B2P48448 385 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 ZBTB16Q05516 673 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 TXNRD1Q16881 649 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RGS21Q2M5E4 152 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 SGO2Q562F6 1265 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 OGFOD2Q6N063 350 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PAOXQ6QHF9 649 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RNF169Q8NCN4 708 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RBM15BQ8NDT2 890 aaKnown RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 HCAR2Q8TDS4 363 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PYDC1Q8WXC3 89 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RMDN1Q96DB5 314 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MCRS1Q96EZ8 462 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PRR11Q96HE9 360 aaPredicted RBP6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 GCNAQ96QF7 691 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 RTKNQ9BST9 563 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 MAGEB5Q9BZ81 275 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 OLFML3Q9NRN5 406 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 PRSS50Q9UI38 385 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 KIAA1257Q9ULG3 409 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 SQORQ9Y6N5 450 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 LAMB1P07942 1786 aa6.77□□□□□ -1.33
TSPAN3-209ENST00000560715 BAZ2AQ9UIF9 1905 aaKnown RBP6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 A0A0G2JND7 137 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 ANKRD63C9JTQ0 380 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 PRKAB2O43741 272 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 SCGB1D1O95968 90 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 ABCB1P08183 1280 aaPredicted RBP6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 INHBBP09529 407 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 FAM58BPP0C7Q3 252 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 SRGAP2BP0DMP2 458 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 KELP23276 732 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 CTNNA2P26232 953 aa6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 HMGB2P26583 209 aaKnown RBP6.76□□□□□ -1.33
TSPAN3-209ENST00000560715 PRDX6P30041 224 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms