RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PPM1FP49593 454 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 RPP30P78346 268 aaKnown RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 BIRC3Q13489 604 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 GPR68Q15743 365 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 C14orf177Q52M58 125 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 RGMBQ6NW40 437 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 FBXO46Q6PJ61 603 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 LCTLQ6UWM7 567 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 DHX40Q8IX18 779 aaKnown RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 ZBTB2Q8N680 514 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 MAELQ96JY0 434 aaKnown RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 KLHL15Q96M94 604 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 UHRF2Q96PU4 802 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 NDST4Q9H3R1 872 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 EBF2Q9HAK2 575 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 GPR108Q9NPR9 543 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 DDX4Q9NQI0 724 aaKnown RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 POU2F3Q9UKI9 436 aa3.79□□□□□ -1.8
SCFD1-216ENST00000555550 LSM4Q9Y4Z0 139 aaKnown RBP3.79□□□□□ -1.8
SCFD1-216ENST00000555550 TMEM202A6NGA9 273 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 AKR1B15C9JRZ8 316 aaPredicted RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 C16orf97H3BN30 126 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 TNPO2O14787 897 aaKnown RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 TFP02787 698 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 POLBP06746 335 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 CYC1P08574 325 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 COX7A2P14406 83 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 AGAP20933 346 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 MCM3P25205 808 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 TMPOP42166 694 aaKnown RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 CCT5P48643 541 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 CLCN3P51790 818 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 UFM1P61960 85 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 PHEXP78562 749 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 SORDQ00796 357 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 SYT16Q17RD7 645 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 EIF2S3LQ2VIR3 472 aaKnown RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 SLC45A4Q5BKX6 768 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 NAA35Q5VZE5 725 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 FOXL2NBQ6ZUU3 175 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 MTSS1LQ765P7 747 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 TAOK1Q7L7X3 1001 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 LINGO2Q7L985 606 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 TRMT1LQ7Z2T5 733 aaKnown RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 SLC9B2Q86UD5 537 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 SLC35F3Q8IY50 421 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 IL17RCQ8NAC3 791 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 OR13A1Q8NGR1 328 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 ZCCHC10Q8TBK6 192 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 UBXN10Q96LJ8 280 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 HAUS8Q9BT25 410 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 VEZTQ9HBM0 779 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 HSPB7Q9UBY9 170 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 FBXO9Q9UK97 447 aaPredicted RBP3.78□□□□□ -1.8
SCFD1-216ENST00000555550 STON1Q9Y6Q2 735 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 DGKBQ9Y6T7 804 aa3.78□□□□□ -1.8
SCFD1-216ENST00000555550 CGNL1Q0VF96 1302 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TTC36A6NLP5 189 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 HNRNPA1P09651 372 aaKnown RBP eCLIP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 RRM1P23921 792 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 GNL1P36915 607 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 CLCNKAP51800 687 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 EFNA5P52803 228 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 SEC61BP60468 96 aaKnown RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 SLC20A2Q08357 652 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 DMP1Q13316 513 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TRPC3Q13507 836 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 CAMK1Q14012 370 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 RNPS1Q15287 305 aaKnown RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 RBBP5Q15291 538 aaKnown RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 ACCSLQ4AC99 568 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 SGO1Q5FBB7 561 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 ANKRD54Q6NXT1 300 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 KCTD18Q6PI47 426 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 SATL1Q86VE3 508 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 ODF3L1Q8IXM7 274 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 KLHDC8BQ8IXV7 354 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 KBTBD3Q8NAB2 608 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 HUS1BQ8NHY5 278 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 MAGEC3Q8TD91 643 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 LRRC8CQ8TDW0 803 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 APOPT1Q96IL0 206 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TTC14Q96N46 770 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 LBHD1Q9BQE6 289 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 H2AFJQ9BTM1 129 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 GFRA4Q9GZZ7 299 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 MKKSQ9NPJ1 570 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TMEM160Q9NX00 188 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 RRN3Q9NYV6 651 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 C1RLQ9NZP8 487 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TINAGQ9UJW2 476 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TTC7AQ9ULT0 858 aaPredicted RBP3.77□□□□□ -1.81
SCFD1-216ENST00000555550 TBX20Q9UMR3 447 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 GAB2Q9UQC2 676 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 ADAM18Q9Y3Q7 739 aa3.77□□□□□ -1.81
SCFD1-216ENST00000555550 ZNF587BE7ETH6 402 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 FGF17O60258 216 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 APOHP02749 345 aaPredicted RBP3.76□□□□□ -1.81
SCFD1-216ENST00000555550 CDH1P12830 882 aa3.76□□□□□ -1.81
SCFD1-216ENST00000555550 SHMT1P34896 483 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms