RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 NPNTQ6UXI9 565 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 CAPN12Q6ZSI9 719 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 NUDT18Q6ZVK8 323 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 CYS1Q717R9 158 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 FAM124AQ86V42 546 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 PACS2Q86VP3 889 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 C4orf33Q8N1A6 199 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SCML4Q8N228 414 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 RNF139Q8WU17 664 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 HTR3CQ8WXA8 447 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SNX19Q92543 992 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 BHMTQ93088 406 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 KCTD15Q96SI1 283 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 NPY6RQ99463 290 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 PAIP2Q9BPZ3 127 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 C6orf106Q9H6K1 298 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SLC40A1Q9NP59 571 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 GPATCH2LQ9NWQ4 482 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 MARK1Q9P0L2 795 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SAE1Q9UBE0 346 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 FTSJ1Q9UET6 329 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 NUDT5Q9UKK9 219 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 FZD10Q9ULW2 581 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 PHTF1Q9UMS5 762 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 ANKRD6Q9Y2G4 727 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 PIK3R2O00459 728 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 RRP8O43159 456 aaKnown RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 PCDHGA12O60330 932 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 RASSF9O75901 435 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 IGLV3-19P01714 112 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 APOEP02649 317 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 JUPP14923 745 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 KRT4P19013 534 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 IL4RP24394 825 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 HCAR3P49019 387 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 DGKGP49619 791 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 PSEN1P49768 467 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 CCT8P50990 548 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 TKTL1P51854 596 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 WDR4P57081 412 aaKnown RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 COG7P83436 770 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 SLC18A2Q05940 514 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 DEUP1Q05D60 604 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 RTP5Q14D33 572 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 PAFAH1B3Q15102 231 aaKnown RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 HES3Q5TGS1 186 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 SNX30Q5VWJ9 437 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 NCBP2-AS2Q69YL0 99 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 ITPRIPL1Q6GPH6 555 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 LVRNQ6Q4G3 990 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 MARK2Q7KZI7 788 aaKnown RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 GATAD2AQ86YP4 633 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 TMPRSS6Q8IU80 811 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 SPACA3Q8IXA5 215 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 DEFB106AQ8N104 65 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 BANPQ8N9N5 519 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 FAM181AQ8N9Y4 354 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 MAGEC3Q8TD91 643 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 ACMSDQ8TDX5 336 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 MZB1Q8WU39 189 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 NT5C3BQ969T7 300 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 PGAP3Q96FM1 320 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 SIPA1Q96FS4 1042 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 CFAP36Q96G28 342 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 VAT1Q99536 393 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 NMUR1Q9HB89 426 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 TM9SF3Q9HD45 589 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 KLC4Q9NSK0 619 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 LSM7Q9UK45 103 aaKnown RBP11.22□□□□□ -0.61
SHMT2-216ENST00000554975 TTLL3Q9Y4R7 772 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 USP3Q9Y6I4 520 aa11.22□□□□□ -0.61
SHMT2-216ENST00000554975 TDRD6O60522 2096 aaKnown RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 EEF2KO00418 725 aaKnown RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 COPEO14579 308 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 KLF11O14901 512 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 CHUKO15111 745 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 BRINP1O60477 761 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 SPAG7O75391 227 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 UBOX5O94941 541 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 CREB1P16220 341 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ACSL1P33121 698 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 AFF3P51826 1226 aaKnown RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 CDK18Q07002 472 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 SRSF1Q07955 248 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 EFEMP1Q12805 493 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 BNIP1Q12981 228 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 RIPK1Q13546 671 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ENPP2Q13822 863 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 MPP2Q14168 576 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 LY6DQ14210 128 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 PRKD1Q15139 912 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 CA9Q16790 459 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 GEN1Q17RS7 908 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 KBTBD12Q3ZCT8 623 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 MSS51Q4VC12 460 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 TAF1BQ53T94 588 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 PRAMEF14Q5SWL7 426 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ARMC3Q5W041 872 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 STEAP4Q687X5 459 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 CYB5D1Q6P9G0 228 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms