RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 RECKO95980 971 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 FUCA1P04066 466 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 NEFLP07196 543 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 VARSP26640 1264 aaKnown RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 MMP12P39900 470 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 LEPRP48357 1165 aaKnown RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 MAPKAPK2P49137 400 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 PMS1P54277 932 aaKnown RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 RHOAP61586 193 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 DNM1Q05193 864 aaKnown RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 SLC25A52Q3SY17 297 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 PNCKQ6P2M8 343 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 WDR74Q6RFH5 385 aaPredicted RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 C6orf15Q6UXA7 325 aaPredicted RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 SLC38A3Q99624 504 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 ULBP3Q9BZM4 244 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 SYNCQ9H7C4 482 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 UBE2TQ9NPD8 197 aaPredicted RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 SLAMF7Q9NQ25 335 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 RCOR3Q9P2K3 495 aaPredicted RBP13.81□□□□□ -0.2
PRPF39-204ENST00000553605 ATP8A1Q9Y2Q0 1164 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 ST14Q9Y5Y6 855 aa13.81□□□□□ -0.2
PRPF39-204ENST00000553605 ARHGAP10A1A4S6 786 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 ZSCAN5CA6NGD5 496 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 RAMP2O60895 175 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 CEACAM5P06731 702 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 MYCLP1P12525 358 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 ZNF28P17035 718 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 GNPDA1P46926 289 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 CTBSQ01459 385 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 INO80DQ53TQ3 878 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 CFAP58Q5T655 872 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 ATL3Q6DD88 541 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 RWDD4Q6NW29 188 aaKnown RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 JMJD6Q6NYC1 403 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 LYSMD3Q7Z3D4 306 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 SLC47A2Q86VL8 602 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 NLRP14Q86W24 1093 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 ZNF761Q86XN6 746 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 ZNF354CQ86Y25 554 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 PELI3Q8N2H9 469 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 C1orf131Q8NDD1 294 aaKnown RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 CASKIN2Q8WXE0 1202 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 NCSTNQ92542 709 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 RNF31Q96EP0 1072 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 RETREG1Q9H6L5 497 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 MLXIPLQ9NP71 852 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 LUZP4Q9P127 313 aa13.8□□□□□ -0.2
PRPF39-204ENST00000553605 PCDHGA9Q9Y5G4 932 aaKnown RBP13.8□□□□□ -0.2
PRPF39-204ENST00000553605 A6NCN8 305 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 BUB1BO60566 1050 aaPredicted RBP13.79□□□□□ -0.2
PRPF39-204ENST00000553605 LRCH4O75427 683 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 CBX6O95503 412 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 RHOQP17081 205 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 NDUFA8P51970 172 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 GRM3Q14832 879 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 PTPN20Q4JDL3 420 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 BRAT1Q6PJG6 821 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 LIPIQ6XZB0 460 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 KRBA2Q6ZNG9 492 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 FAM131BQ86XD5 332 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 ZDHHC17Q8IUH5 632 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 Q8NA96 180 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 GALNT6Q8NCL4 622 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 EXOC2Q96KP1 924 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 ZNF641Q96N77 438 aaPredicted RBP13.79□□□□□ -0.2
PRPF39-204ENST00000553605 UNKQ9C0B0 810 aaKnown RBP13.79□□□□□ -0.2
PRPF39-204ENST00000553605 TMEM248Q9NWD8 314 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 OR12D3Q9UGF7 316 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 SUFUQ9UMX1 484 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 PCDHGC3Q9UN70 934 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 ENTPD4Q9Y227 616 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 PCDHGA6Q9Y5G7 932 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 CSMD2Q7Z408 3487 aa13.79□□□□□ -0.2
PRPF39-204ENST00000553605 TRBV23OR9-2A0A075B6M9 112 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 TRIM49BA6NDI0 452 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ELFN1P0C7U0 828 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ADCY8P40145 1251 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 USP8P40818 1118 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ACTR1BP42025 376 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 FASLGP48023 281 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 CCL11P51671 97 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ACTR1AP61163 376 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 LRRC63Q05C16 580 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 FOXM1Q08050 763 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 RALGDSQ12967 914 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 NR6A1Q15406 480 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 CCDC40Q4G0X9 1142 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ZRANB3Q5FWF4 1079 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 PAPD7Q5XG87 772 aaKnown RBP13.78□□□□□ -0.2
PRPF39-204ENST00000553605 ZSWIM9Q86XI8 627 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 DNAAF5Q86Y56 855 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 STAMBPL1Q96FJ0 436 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 PHPT1Q9NRX4 125 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-204ENST00000553605 KLHL3Q9UH77 587 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 PHTF1Q9UMS5 762 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 PDZD2O15018 2839 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 NF1P21359 2839 aa13.78□□□□□ -0.2
PRPF39-204ENST00000553605 BECN2A8MW95 431 aa13.77□□□□□ -0.21
PRPF39-204ENST00000553605 KRT86O43790 486 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms