RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZFYVE27Q5T4F4 411 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 DEPDC1Q5TB30 811 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 KAZNQ674X7 775 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ITPRIPL1Q6GPH6 555 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 DNAJC24Q6P3W2 148 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 DCUN1D2Q6PH85 259 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TXNDC11Q6PKC3 985 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TPRG1Q6ZUI0 275 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 BHLHA9Q7RTU4 235 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 WDR75Q8IWA0 830 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SCUBE3Q8IX30 993 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 CENPSQ8N2Z9 138 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PDZD8Q8NEN9 1154 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 OVCA2Q8WZ82 227 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 CMTM5Q96DZ9 223 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SGF29Q96ES7 293 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 RANBP9Q96S59 729 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SLC2A11Q9BYW1 496 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ULBP1Q9BZM6 244 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 STN1Q9H668 368 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF395Q9H8N7 513 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TLR8Q9NR97 1041 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 VPS45Q9NRW7 570 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ZMYM5Q9UJ78 669 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ARHGAP26Q9UNA1 814 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 APOBEC2Q9Y235 224 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PLLPQ9Y342 182 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 FARP1Q9Y4F1 1045 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 WNT6Q9Y6F9 365 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SCINQ9Y6U3 715 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TCRBV5S1A1TA0A578 114 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TMEM191CA6NGB0 347 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 NDUFB5O43674 189 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SNNO75324 88 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 FBXO21O94952 628 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ESRRBO95718 433 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 MBL2P11226 248 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 KRT3P12035 628 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 KRT10P13645 584 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 LCP1P13796 627 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 GABRB2P47870 512 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TUBA4AP68366 448 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ADIGQ0VDE8 80 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PDE1CQ14123 709 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PM20D1Q6GTS8 502 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ASTLQ6HA08 431 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 OR6B2Q6IFH4 312 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 NEPROQ6NW34 567 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ZFP1Q6P2D0 407 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 C16orf87Q6PH81 154 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 CDHR3Q6ZTQ4 885 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 XYLT1Q86Y38 959 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TICAM1Q8IUC6 712 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 EFCAB3Q8N7B9 438 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 CLEC4CQ8WTT0 213 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SLC44A1Q8WWI5 657 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 STARD8Q92502 1023 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 EME1Q96AY2 570 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PLEKHA8Q96JA3 519 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 MCEEQ96PE7 176 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 DRC3Q9H069 523 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 CCDC68Q9H2F9 335 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 COMMD8Q9NX08 183 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PIAS3Q9Y6X2 628 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 KMT2EQ8IZD2 1858 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 LAMA1P25391 3075 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 YJEFN3A6XGL0 299 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 E7ESA3 106 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CNOT3O75175 753 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SIN3BO75182 1162 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 H6PDO95479 791 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ZBTB11O95625 1053 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ITGAVP06756 1048 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 RFC1P35251 1148 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 YWHAGP61981 247 aaKnown RBP eCLIP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ESRRGP62508 458 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CDKL1Q00532 357 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GAD2Q05329 585 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ZBTB17Q13105 803 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 STX3Q13277 289 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 FZD5Q13467 585 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 TUBB3Q13509 450 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ATP1A4Q13733 1029 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 UBXN2BQ14CS0 331 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 BBS9Q3SYG4 887 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 DCAF6Q58WW2 860 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 TTC39BQ5VTQ0 682 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CES4AQ5XG92 561 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GPR141Q7Z602 305 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GPR180Q86V85 440 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 RCOR2Q8IZ40 523 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 PDIK1LQ8N165 341 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GALNT4Q8N4A0 578 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CSGALNACT1Q8TDX6 532 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CHPT1Q8WUD6 406 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 OSCP1Q8WVF1 389 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 DNASE1L2Q92874 299 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 THAP11Q96EK4 314 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 WDR83Q9BRX9 315 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms