RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PRKAA1Q13131 559 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GPR17Q13304 367 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 TUBB3Q13509 450 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 BFSP2Q13515 415 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 FLOT2Q14254 428 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GPNMBQ14956 572 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 TCEA2Q15560 299 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 TRIP4Q15650 581 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SWT1Q5T5J6 900 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 WLSQ5T9L3 541 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 RNF220Q5VTB9 566 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PSAPL1Q6NUJ1 521 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 POTEHQ6S545 545 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 MILR1Q7Z6M3 343 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DNAJB7Q7Z6W7 309 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 RBM23Q86U06 439 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CPNE9Q8IYJ1 553 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DSELQ8IZU8 1212 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 BBS5Q8N3I7 341 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 OR4L1Q8NH43 312 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ARRDC2Q8TBH0 407 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PGAP3Q96FM1 320 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CDKN2AIPNLQ96HQ2 116 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 EGFL8Q99944 293 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CORO1BQ9BR76 489 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CDH22Q9UJ99 828 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 AGO1Q9UL18 857 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 RNF112Q9ULX5 631 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 POMPQ9Y244 141 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CPQQ9Y646 472 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 A0A0G2JMZ2 1700 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PRUNE2Q8WUY3 3088 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 A0A1W2PRU2 124 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC189A1A4V9 331 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 FAM149AA5PLN7 773 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 DPPA5A6NC42 116 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 UNCXA6NJT0 531 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 H3BMM5 538 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 KLF11O14901 512 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 UBDO15205 165 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ATP6V1B1P15313 513 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 MS4A2Q01362 244 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 KRT72Q14CN4 511 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 VPS26BQ4G0F5 336 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ANO7Q6IWH7 933 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 EPGNQ6UW88 154 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 RFLNAQ6ZTI6 216 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 BNIPLQ7Z465 357 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 NPAS4Q8IUM7 802 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 APCDD1Q8J025 514 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CDYL2Q8N8U2 506 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 LMNTD1Q8N9Z9 388 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 BHLHE22Q8NFJ8 381 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 GRIN3AQ8TCU5 1115 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 GDPD5Q8WTR4 605 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 VPS33AQ96AX1 596 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 IMP4Q96G21 291 aaKnown RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SLC39A13Q96H72 371 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 LRCH3Q96II8 777 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 C3orf30Q96M34 536 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 UROC1Q96N76 676 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 WDR41Q9HAD4 459 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CATSPERZQ9NTU4 200 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 NEU3Q9UQ49 428 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 COPG1Q9Y678 874 aaKnown RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF487B1APH4 448 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CCL16O15467 120 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 PSMD3O43242 534 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 MAP3K13O43283 966 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 S1PR4O95977 384 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ALDH1A1P00352 501 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 MMP2P08253 660 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ETS2P15036 469 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CSF2RAP15509 400 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ATP5F1P24539 256 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 EEF1DP29692 281 aaKnown RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CSKP41240 450 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 AIF1P55008 147 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 NRG1Q02297 640 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SERINC3Q13530 473 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 FASTKQ14296 549 aaKnown RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 OR4D1Q15615 310 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 AAK1Q2M2I8 961 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 USP41Q3LFD5 358 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 DNAL1Q4LDG9 190 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 TMCO4Q5TGY1 634 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF549Q6P9A3 640 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SPRED2Q7Z698 418 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CILP2Q8IUL8 1156 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 KYQ8NBH2 561 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 MDGA1Q8NFP4 955 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 DNAJB14Q8TBM8 379 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SPPL2BQ8TCT7 592 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 STYXQ8WUJ0 223 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SORCS1Q8WY21 1168 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ING5Q8WYH8 240 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 TSGA13Q96PP4 275 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 YME1L1Q96TA2 773 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 C1QTNF1Q9BXJ1 281 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms