RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 KIF9Q9HAQ2 790 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 MAGEE1Q9HCI5 957 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 TRNAU1APQ9NX07 287 aaKnown RBP5.06□□□□□ -1.6
LIMA1-205ENST00000550592 AAR2Q9Y312 384 aaKnown RBP5.06□□□□□ -1.6
LIMA1-205ENST00000550592 RABGAP1Q9Y3P9 1069 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 NFE2L3Q9Y4A8 694 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 HS3ST3B1Q9Y662 390 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 UNC13BO14795 1591 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 DIP2AQ14689 1571 aa5.06□□□□□ -1.6
LIMA1-205ENST00000550592 TMEM272A0A1B0GTI8 110 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 CHL1O00533 1208 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 HNRNPCL1O60812 293 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ZC3H11AO75152 810 aaKnown RBP eCLIP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 TFPIP10646 304 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PRF1P14222 555 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PORP16435 677 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 MMP13P45452 471 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ME1P48163 572 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 NLRP5P59047 1200 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 SELENOVP59797 346 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 MC1RQ01726 317 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 AIMP2Q13155 320 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 DRAP1Q14919 205 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ARHGEF6Q15052 776 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 TOMM20Q15388 145 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 COL28A1Q2UY09 1125 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 CXorf66Q5JRM2 361 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 MANEAQ5SRI9 462 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 NUGGCQ68CJ6 796 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PATL1Q86TB9 770 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ADGRF2Q8IZF7 708 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 MMP21Q8N119 569 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PARP16Q8N5Y8 322 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 NANOGP1Q8N7R0 232 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 GABPB2Q8TAK5 448 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 SNRNP27Q8WVK2 155 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 INPP5DQ92835 1189 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 OTULINQ96BN8 352 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 FAM120BQ96EK7 910 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 POLDIP3Q9BY77 421 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 FTOQ9C0B1 505 aaKnown RBP eCLIP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 TKTL2Q9H0I9 626 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 BPIFA1Q9NP55 256 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 CLIC5Q9NZA1 410 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ADD3Q9UEY8 706 aaKnown RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 ZNF215Q9UL58 517 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-205ENST00000550592 CLIP1P30622 1438 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PTCH1Q13635 1447 aa5.05□□□□□ -1.6
LIMA1-205ENST00000550592 PLXNC1O60486 1568 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SAMD9LQ8IVG5 1584 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 FAM90A8PA6NJQ4 464 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 A8MZ25 164 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SCAMP1O15126 338 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 AHCYL1O43865 530 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 PPFIA2O75334 1257 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 TSPAN9O75954 239 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 MTA2O94776 668 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 MMP2P08253 660 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 FAM90A13PP0C7W8 464 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 FAM90A24PP0C7X0 464 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 CSH1P0DML2 217 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 CSH2P0DML3 217 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 FBLP22087 321 aaKnown RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 GNLYP22749 145 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 MYF6P23409 242 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 GARSP41250 739 aaKnown RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 F2RL1P55085 397 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 ITGADQ13349 1161 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 LAMB3Q13751 1172 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 WTAPQ15007 396 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 KRT24Q2M2I5 525 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 USP41Q3LFD5 358 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 DCAF6Q58WW2 860 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 RILPL1Q5EBL4 403 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 WASHC2DQ5SRD0 308 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 PLEKHA7Q6IQ23 1121 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 TMEM154Q6P9G4 183 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 LINGO2Q7L985 606 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 TRAPPC11Q7Z392 1133 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SFTPA2Q8IWL1 248 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SGCDQ92629 289 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 TMEM68Q96MH6 324 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 GFM1Q96RP9 751 aaKnown RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 ISCUQ9H1K1 167 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 PDZD7Q9H5P4 517 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SH2D4AQ9H788 454 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SIRT3Q9NTG7 399 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 CNOT8Q9UFF9 292 aaKnown RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 MTMR6Q9Y217 621 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 CEPT1Q9Y6K0 416 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 NCOA2Q15596 1464 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 KDM5AP29375 1690 aaKnown RBP5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SAMD9Q5K651 1589 aa5.04□□□□□ -1.6
LIMA1-205ENST00000550592 SLIT1O75093 1534 aa5.03□□□□□ -1.6
LIMA1-205ENST00000550592 hCG_1807616A0A1W2PRN6 198 aa5.03□□□□□ -1.6
LIMA1-205ENST00000550592 FIBPO43427 364 aa5.03□□□□□ -1.6
LIMA1-205ENST00000550592 RGS11O94810 467 aa5.03□□□□□ -1.6
LIMA1-205ENST00000550592 KRT10P13645 584 aa5.03□□□□□ -1.6
LIMA1-205ENST00000550592 ZNF182P17025 639 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-205ENST00000550592 TBXAS1P24557 533 aaPredicted RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms