RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ARHGAP36Q6ZRI8 547 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ZNF621Q6ZSS3 439 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 SLC28A3Q9HAS3 691 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 EXOSC4Q9NPD3 245 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 DYRK1BQ9Y463 629 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 TRAV19A0A0A6YYK7 116 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 MAPK1P28482 360 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 YBEYP58557 167 aaPredicted RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 IRX1P78414 480 aaPredicted RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 PLPP4Q5VZY2 271 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ATG16L2Q8NAA4 619 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 ELMO1Q92556 727 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 DDX18Q9NVP1 670 aaKnown RBP16.3■□□□□ 0.2
CUX1-213ENST00000549414 LZTS1Q9Y250 596 aa16.3■□□□□ 0.2
CUX1-213ENST00000549414 LRP5O75197 1615 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 FAM159BA6NKW6 160 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 ACRP10323 421 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 POLR2EP19388 210 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 GPC1P35052 558 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 FAM98BQ52LJ0 330 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 GPR141Q7Z602 305 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 GRIP2Q9C0E4 1043 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 TNKS2Q9H2K2 1166 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CCSER2Q9H7U1 834 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 EIF2B3Q9NR50 452 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 COMMD8Q9NX08 183 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CHCHD3Q9NX63 227 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 SLX4Q8IY92 1834 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 MAP3K13O43283 966 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 GOT2P00505 430 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ANXA5P08758 320 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 PKMP14618 531 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ALOX15P16050 662 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ATP6V1C1P21283 382 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 S100A3P33764 101 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CCT8P50990 548 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 PRKD1Q15139 912 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 MICU2Q8IYU8 434 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 ARHGEF3Q9NR81 526 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 PAPOLBQ9NRJ5 636 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 SLC20A2Q08357 652 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 ZYG11AQ6WRX3 759 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.29■□□□□ 0.26e-7■■■■■ 139.2
CUX1-213ENST00000549414 DSELQ8IZU8 1212 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 FBXW8Q8N3Y1 598 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 OR13C4Q8NGS5 318 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 RPL10LQ96L21 214 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 GABRQQ9UN88 632 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 TRIM38O00635 465 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 RGS14O43566 566 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 ULK1O75385 1050 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CHI3L1P36222 383 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 NRG1Q02297 640 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ZIK1Q3SY52 487 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 CES5AQ6NT32 575 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 FBXL22Q6P050 247 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 ARL14EPQ8N8R7 260 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ITFG1Q8TB96 612 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 MAGEE2Q8TD90 523 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 RMND5BQ96G75 393 aaPredicted RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 SH3GL1Q99961 368 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 VRTNQ9H8Y1 702 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CDH22Q9UJ99 828 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 CNTN6Q9UQ52 1028 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 FCF1Q9Y324 198 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 TNPO3Q9Y5L0 923 aaKnown RBP16.29■□□□□ 0.2
CUX1-213ENST00000549414 ARL5AQ9Y689 179 aa16.29■□□□□ 0.2
CUX1-213ENST00000549414 PDZK1P1A8MUH7 402 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 UBXN8O00124 270 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 KCNQ1P51787 676 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 HTRA3P83110 453 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 ACSM2AQ08AH3 577 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 NEDD8Q15843 81 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 ACSM2BQ68CK6 577 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 ERAP2Q6P179 960 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 C6orf89Q6UWU4 347 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 CDHR3Q6ZTQ4 885 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 GPRIN1Q7Z2K8 1008 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 PHACTR4Q8IZ21 702 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 CLHC1Q8NHS4 586 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 SH3GL3Q99963 347 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 DCUN1D5Q9BTE7 237 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 ADAMTS10Q9H324 1103 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 MTF2Q9Y483 593 aaPredicted RBP16.28■□□□□ 0.2
CUX1-213ENST00000549414 CAPN8A6NHC0 703 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 M0R3G1 203 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 TRAFD1O14545 582 aaPredicted RBP16.28■□□□□ 0.2
CUX1-213ENST00000549414 SCNN1AP37088 669 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 RANBP1P43487 201 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 RFX3P48380 749 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 POLR2LP62875 67 aaKnown RBP16.28■□□□□ 0.2
CUX1-213ENST00000549414 NAIF1Q69YI7 327 aaPredicted RBP16.28■□□□□ 0.2
CUX1-213ENST00000549414 PRMT9Q6P2P2 845 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 FBXO22Q8NEZ5 403 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 SPPL2AQ8TCT8 520 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 KCTD13Q8WZ19 329 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 ROGDIQ9GZN7 287 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 MSRAQ9UJ68 235 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 SNX8Q9Y5X2 465 aa16.28■□□□□ 0.2
CUX1-213ENST00000549414 DEAF1O75398 565 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms