RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 SLITRK1Q96PX8 696 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 BBS4Q96RK4 519 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 NUF2Q9BZD4 464 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 TMX4Q9H1E5 349 aaPredicted RBP4.24□□□□□ -1.73
PTCH1-216ENST00000548379 CCDC68Q9H2F9 335 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 PDZD7Q9H5P4 517 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 FZD3Q9NPG1 666 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 DDX4Q9NQI0 724 aaKnown RBP4.24□□□□□ -1.73
PTCH1-216ENST00000548379 SMYD2Q9NRG4 433 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 ZBTB40Q9NUA8 1239 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 HAUS2Q9NVX0 235 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 DLGAP2Q9P1A6 1054 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 NFE2L3Q9Y4A8 694 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 LSM4Q9Y4Z0 139 aaKnown RBP4.24□□□□□ -1.73
PTCH1-216ENST00000548379 LMTK2Q8IWU2 1503 aa4.24□□□□□ -1.73
PTCH1-216ENST00000548379 COL3A1P02461 1466 aaPredicted RBP4.24□□□□□ -1.73
PTCH1-216ENST00000548379 ROBO1Q9Y6N7 1651 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 DCCP43146 1447 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SETD5Q9C0A6 1442 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 ADGRB3O60242 1522 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 TYW5A2RUC4 315 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 EIF3CLB5ME19 914 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 AHCYL1O43865 530 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 NDUFB8O95169 186 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 MMP2P08253 660 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 ETFAP13804 333 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 CHATP28329 748 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 ALDH7A1P49419 539 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 CDH12P55289 794 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 C21orf58P58505 322 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 NLRP5P59047 1200 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 AIMP2Q13155 320 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 CAPSQ13938 189 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 RUNX2Q13950 521 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 FRG1Q14331 258 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SRSF7Q16629 238 aaKnown RBP eCLIP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 KRT24Q2M2I5 525 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 TCTN1Q2MV58 587 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 PRAMEF19Q5SWL8 479 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 NUGGCQ68CJ6 796 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 JADE1Q6IE81 842 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 KLHL35Q6PF15 583 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SHC4Q6S5L8 630 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 TSSK4Q6SA08 328 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 PARM1Q6UWI2 310 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 QSOX2Q6ZRP7 698 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 PATL1Q86TB9 770 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 LURAP1LQ8IV03 231 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SFTPA2Q8IWL1 248 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 GABPB2Q8TAK5 448 aaPredicted RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SNRNP27Q8WVK2 155 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 FBXL8Q96CD0 374 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 FAM120BQ96EK7 910 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 PPP1R13BQ96KQ4 1090 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 NEUROD6Q96NK8 337 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 CRAMP1Q96RY5 1269 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SERINC2Q96SA4 455 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SIN3AQ96ST3 1273 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 LHPPQ9H008 270 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 MAGEE1Q9HCI5 957 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 SIRT3Q9NTG7 399 aaPredicted RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 DECR2Q9NUI1 292 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 TRNAU1APQ9NX07 287 aaKnown RBP4.23□□□□□ -1.73
PTCH1-216ENST00000548379 CLIC5Q9NZA1 410 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 HS3ST3B1Q9Y662 390 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 LRP6O75581 1613 aa4.23□□□□□ -1.73
PTCH1-216ENST00000548379 TET3O43151 1660 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 ZFYVE9O95405 1425 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 TMEM272A0A1B0GTI8 110 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 FAM237AA0A1B0GTK4 181 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 DYTNA2CJ06 578 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 MYO1GB0I1T2 1018 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 PTGES3LE9PB15 166 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SNAP23O00161 211 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 CHL1O00533 1208 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 AP3D1O14617 1153 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SCAMP1O15126 338 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 LDB2O43679 373 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 ATP2C2O75185 946 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SOX30O94993 753 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 PGM3O95394 542 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 PORP16435 677 aaPredicted RBP4.22□□□□□ -1.73
PTCH1-216ENST00000548379 MYF6P23409 242 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 TMPRSS3P57727 454 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 PRAMEP78395 509 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 MC1RQ01726 317 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 IRF3Q14653 427 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 KCTD2Q14681 263 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 TOMM20Q15388 145 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 COL28A1Q2UY09 1125 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 USP41Q3LFD5 358 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 LCTLQ6UWM7 567 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 LINGO2Q7L985 606 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SZRD1Q7Z422 152 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SLC35F3Q8IY50 421 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 ADGRF2Q8IZF7 708 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 PARP16Q8N5Y8 322 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 GPT2Q8TD30 523 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 SLC35F5Q8WV83 523 aa4.22□□□□□ -1.73
PTCH1-216ENST00000548379 POMGNT1Q8WZA1 660 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms