RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 DNAAF3Q8N9W5 541 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 MFSD2AQ8NA29 543 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 GLIS1Q8NBF1 620 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 C1orf216Q8TAB5 229 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CENPTQ96BT3 561 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CDH19Q9H159 772 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PKD2L2Q9NZM6 624 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 SLC6A14Q9UN76 642 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 COQ6Q9Y2Z9 468 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 C2orf81A6NN90 581 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 SUN1O94901 812 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 CRTAMO95727 393 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 CFIP05156 583 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 SYPP08247 313 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PIRTP0C851 137 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 LHCGRP22888 699 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 CHRNA4P43681 627 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 VPS41P49754 854 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 STC1P52823 247 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PDE1BQ01064 536 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 CDH17Q12864 832 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 LAMB3Q13751 1172 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 DHX34Q14147 1143 aaKnown RBP13.77□□□□□ -0.21
PTCH1-213ENST00000546820 FGL2Q14314 439 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PTPRRQ15256 657 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 GON4LQ3T8J9 2241 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 TRIM61Q5EBN2 209 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PLA2G2CQ5R387 149 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 WDFY4Q6ZS81 3184 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 TMC3Q7Z5M5 1100 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PCGF5Q86SE9 256 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 TSPAN33Q86UF1 283 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 NLRP8Q86W28 1048 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 MNS1Q8NEH6 495 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 BLOC1S5Q8TDH9 187 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 FAM122AQ96E09 287 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 KLHDC7BQ96G42 594 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 COQ10AQ96MF6 247 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 PHOX2BQ99453 314 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 KRT12Q99456 494 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 APOL2Q9BQE5 337 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 ORAI3Q9BRQ5 295 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 EIF2B3Q9NR50 452 aaKnown RBP13.77□□□□□ -0.21
PTCH1-213ENST00000546820 SHOC2Q9UQ13 582 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 NEU2Q9Y3R4 380 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 ZNF711Q9Y462 761 aa13.77□□□□□ -0.21
PTCH1-213ENST00000546820 ATXN2Q99700 1313 aaKnown RBP13.76□□□□□ -0.21
PTCH1-213ENST00000546820 A6NNZ2 444 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 VILLO15195 856 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 USP12O75317 370 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 PPFIA2O75334 1257 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 PYGLP06737 847 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 CSNK1EP49674 416 aaKnown RBP13.76□□□□□ -0.21
PTCH1-213ENST00000546820 SPEM2Q0P670 501 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 CSRP2Q16527 193 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 CDKN3Q16667 212 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 WSCD2Q2TBF2 565 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 ZDHHC20Q5W0Z9 365 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 IL27RAQ6UWB1 636 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 Q6ZVL8 140 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 ASCL5Q7RTU5 278 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 LYSMD3Q7Z3D4 306 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 ZNF572Q7Z3I7 529 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-213ENST00000546820 GLT6D1Q7Z4J2 308 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 HSD11B1LQ7Z5J1 315 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 TECPR1Q7Z6L1 1165 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 TMEM145Q8NBT3 493 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 BRSK1Q8TDC3 778 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 NUS1Q96E22 293 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 DTD2Q96FN9 168 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 SLC6A18Q96N87 628 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 SMIM14Q96QK8 99 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 KLF6Q99612 283 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-213ENST00000546820 ZDHHC5Q9C0B5 715 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 FZD3Q9NPG1 666 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 SEMA4GQ9NTN9 838 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTCH1-213ENST00000546820 ASIC3Q9UHC3 531 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 PKP3Q9Y446 797 aa13.76□□□□□ -0.21
PTCH1-213ENST00000546820 GOLGA8CPA6NN73 597 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 TLR4O00206 839 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 NDC80O14777 642 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 GFRA3O60609 400 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 TPSB2P20231 275 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 LPOP22079 712 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-213ENST00000546820 HMGCLP35914 325 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 ETV3P41162 512 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 PTGIRP43119 386 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 RABIFP47224 123 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 SPINT3P49223 89 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 YPEL5P62699 121 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 DPTQ07507 201 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 PTK6Q13882 451 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 PTK2BQ14289 1009 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 TAF1AQ15573 450 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-213ENST00000546820 TPSAB1Q15661 275 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 DENND5AQ6IQ26 1287 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 PNCKQ6P2M8 343 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 Q6ZSR6 202 aa13.75□□□□□ -0.21
PTCH1-213ENST00000546820 ZNF765Q7L2R6 523 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms