RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FBXO2Q9UK22 296 aaPredicted RBP4.8□□□□□ -1.64
LIMS1-214ENST00000542845 OSGIN2Q9Y236 505 aa4.8□□□□□ -1.64
LIMS1-214ENST00000542845 HS3ST2Q9Y278 367 aa4.8□□□□□ -1.64
LIMS1-214ENST00000542845 SRPRBQ9Y5M8 271 aaKnown RBP4.8□□□□□ -1.64
LIMS1-214ENST00000542845 OR51B4Q9Y5P0 310 aa4.8□□□□□ -1.64
LIMS1-214ENST00000542845 ACTL7AQ9Y615 435 aa4.8□□□□□ -1.64
LIMS1-214ENST00000542845 PDZD2O15018 2839 aa4.8□□□□□ -1.64
LIMS1-214ENST00000542845 PCSK5Q92824 1860 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ARHGEF17Q96PE2 2063 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 IGHV1OR21-1A0A087WYE8 117 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 HEATR9A2RTY3 570 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZSCAN5CA6NGD5 496 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 B4E171 279 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 M0QYV0 167 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 CACNB4O00305 520 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TOR1BO14657 336 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZNF185O15231 689 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PPM1DO15297 605 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TEX33O43247 280 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 DPM1O60762 260 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 CLDN11O75508 207 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 CREG1O75629 220 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 NR3C1P04150 777 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 FGF1P05230 155 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SETSIPP0DME0 302 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 RARAP10276 462 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 VDRP11473 427 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 KRT13P13646 458 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 COX6B1P14854 86 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZNF28P17035 718 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TSPAN7P41732 249 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 STAT1P42224 750 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 GLRBP48167 497 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PEX5P50542 639 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 CDH4P55283 916 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PITX1P78337 314 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 NME3Q13232 169 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PWP1Q13610 501 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 RAPSNQ13702 412 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 AUHQ13825 339 aaKnown RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZRSR2Q15696 482 aaKnown RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 WSCD2Q2TBF2 565 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PLEKHN1Q494U1 663 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZNF805Q5CZA5 627 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 HGSNATQ68CP4 663 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SLC6A19Q695T7 634 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TMEM71Q6P5X7 295 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SLC30A9Q6PML9 568 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 RIPOR1Q6ZS17 1223 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TFAP2DQ7Z6R9 452 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 FJX1Q86VR8 437 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZSCAN30Q86W11 494 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 RASGRP3Q8IV61 690 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 C12orf56Q8IXR9 622 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 IQCKQ8N0W5 287 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SCML4Q8N228 414 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TTC39CQ8N584 583 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 Q8NA96 180 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 GLIS1Q8NBF1 620 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PLA2G15Q8NCC3 412 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 OR56A4Q8NGH8 313 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 GOLGA5Q8TBA6 731 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 CPLX3Q8WVH0 158 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 NCSTNQ92542 709 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SEMA4DQ92854 862 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 RAB7BQ96AH8 199 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ARHGEF26Q96DR7 871 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 STAMBPL1Q96FJ0 436 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 PRMT1Q99873 361 aaKnown RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZPBPQ9BS86 351 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 LATS2Q9NRM7 1088 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 DDIT4Q9NX09 232 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 MPP6Q9NZW5 540 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 COPG2Q9UBF2 871 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ZNF451Q9Y4E5 1061 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 TMEM184BQ9Y519 407 aaPredicted RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 SNX10Q9Y5X0 201 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 COPG1Q9Y678 874 aaKnown RBP4.79□□□□□ -1.64
LIMS1-214ENST00000542845 ADGRG4Q8IZF6 3080 aa4.79□□□□□ -1.64
LIMS1-214ENST00000542845 AKAP9Q99996 3911 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 HIVEP3Q5T1R4 2406 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CSMD2Q7Z408 3487 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 RP1L1Q8IWN7 2480 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 O00370 1275 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SRGAP2O75044 1071 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ZNF821O75541 412 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 GRAP2O75791 330 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SASH3O75995 380 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 KIAA0754O94854 1291 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FBXO21O94952 628 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 THRAP10827 490 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SLC2A3P11169 496 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 DRD2P14416 443 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 NFKBIAP25963 317 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 AK4P27144 223 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 OR1E1P30953 314 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CCR1P32246 355 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CSF2RBP32927 897 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 NASPP49321 788 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ITGA1P56199 1179 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms