RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	HOXB5	P09067	269 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	SRC	P12931	536 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	DGKA	P23743	735 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ABCD3	P28288	659 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	HNRNPH1	P31943	449 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ABCD1	P33897	745 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	CLDN2	P57739	230 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	NLRP5	P59047	1200 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	UFM1	P61960	85 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	KRT32	Q14532	448 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	OASL	Q15646	514 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	MAPRE1	Q15691	268 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ZRSR1	Q15695	479 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ZNF667	Q5HYK9	610 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	FAM69B	Q5VUD6	431 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	IRAK1BP1	Q5VVH5	260 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	CCDC30	Q5VVM6	783 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	GDPD4	Q6W3E5	623 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	TUBA1A	Q71U36	451 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	LINGO2	Q7L985	606 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	FOXP4	Q8IVH2	680 aa	Predicted RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	DIS3L2	Q8IYB7	885 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	MAB21L3	Q8N8X9	362 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ZNF114	Q8NC26	417 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	NEK9	Q8TD19	979 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	TANK	Q92844	425 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	SNAPC3	Q92966	411 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ERGIC1	Q969X5	290 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ELP4	Q96EB1	424 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	SCMH1	Q96GD3	660 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	C7orf26	Q96N11	449 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	TUBA1C	Q9BQE3	449 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	FUZ	Q9BT04	418 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	PHF7	Q9BWX1	381 aa	Predicted RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	SLC25A18	Q9H1K4	315 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	RANBP17	Q9H2T7	1088 aa	Known RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	PRKRIP1	Q9H875	184 aa	Predicted RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	EVA1A	Q9H8M9	152 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	MAGEE1	Q9HCI5	957 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	C20orf141	Q9NUB4	165 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	KCND2	Q9NZV8	630 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	CTNNAL1	Q9UBT7	734 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	POU2F3	Q9UKI9	436 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	RCOR1	Q9UKL0	485 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ERVK-11	Q9UQG0	969 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	NFE2L3	Q9Y4A8	694 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	TRIP12	Q14669	1992 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	CPED1	A4D0V7	1026 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296		J3KR12	359 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	TACC1	O75410	805 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	BAIAP3	O94812	1187 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	KDM4B	O94953	1096 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	TF	P02787	698 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	ATP1A3	P13637	1013 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	KRT10	P13645	584 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	MCM3	P25205	808 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	NFKBIA	P25963	317 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SSTR2	P30874	369 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GNL1	P36915	607 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	PPARG	P37231	505 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	HARS2	P49590	506 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	CXCR3	P49682	368 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	CLCNKA	P51800	687 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	TERF1	P54274	439 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SEC61B	P60468	96 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	MPP1	Q00013	466 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GRSF1	Q12849	480 aa	Known RBP eCLIP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	MAMLD1	Q13495	774 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SIM2	Q14190	667 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GSTA3	Q16772	222 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SYT16	Q17RD7	645 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	KRT24	Q2M2I5	525 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	ZNF628	Q5EBL2	1059 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GFI1B	Q5VTD9	330 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GGNBP1	Q5YKI7	109 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	HAUS3	Q68CZ6	603 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	ITPRIPL1	Q6GPH6	555 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	LRRC8E	Q6NSJ5	796 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	FAM180B	Q6P0A1	224 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	METTL2B	Q6P1Q9	378 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	KCTD18	Q6PI47	426 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	METTL27	Q8N6F8	245 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	NEXN-AS1	Q8NBZ9	246 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	RFFL	Q8WZ73	363 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	POMGNT1	Q8WZA1	660 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	FIG4	Q92562	907 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	NR4A3	Q92570	626 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	CD101	Q93033	1021 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	MOAP1	Q96BY2	351 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	TMEM19	Q96HH6	336 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	METTL2A	Q96IZ6	378 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SH3GL2	Q99962	352 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	NCAPG	Q9BPX3	1015 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	GAREM1	Q9H706	876 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	UBTD1	Q9HAC8	227 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	CNGB3	Q9NQW8	809 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	EIF2B3	Q9NR50	452 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SLC9A2	Q9UBY0	812 aa		2.81	□□□□□ -1.96
CD44-238	ENST00000534296	LIMA1	Q9UHB6	759 aa	Known RBP	2.81	□□□□□ -1.96
CD44-238	ENST00000534296	SARDH	Q9UL12	918 aa		2.81	□□□□□ -1.96

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