RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 R3HDM2Q9Y2K5 976 aaKnown RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 SPAARA0A1B0GVQ0 90 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 H7C0C1 242 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 K7ESM1 405 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 PIAS2O75928 621 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 EPOP01588 193 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 ZNF30P17039 623 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 TEAD1P28347 426 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 ETV3P41162 512 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 ATP5OP48047 213 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 STC1P52823 247 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 EIF3EP60228 445 aaKnown RBP12.98□□□□□ -0.33
VPS28-216ENST00000533806 CDK18Q07002 472 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 DPTQ07507 201 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 ACOX1Q15067 660 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 TRIP6Q15654 476 aaKnown RBP12.98□□□□□ -0.33
VPS28-216ENST00000533806 ZNF542PQ5EBM4 170 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 LRRC66Q68CR7 880 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 MACC1Q6ZN28 852 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 Q6ZVL8 140 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 PID1Q7Z2X4 250 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 PARGQ86W56 976 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 KLHDC8BQ8IXV7 354 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 NDUFAF2Q8N183 169 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 PAF1Q8N7H5 531 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 TTC13Q8NBP0 860 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 LPCAT1Q8NF37 534 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 SLC35B2Q8TB61 432 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 RHBDD1Q8TEB9 315 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 SETD7Q8WTS6 366 aaKnown RBP12.98□□□□□ -0.33
VPS28-216ENST00000533806 WDR24Q96S15 920 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 FAM118BQ9BPY3 351 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 MLPHQ9BV36 600 aaPredicted RBP12.98□□□□□ -0.33
VPS28-216ENST00000533806 ADGRE3Q9BY15 652 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 UCKL1Q9NWZ5 548 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 DNPEPQ9ULA0 475 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 OR1A2Q9Y585 309 aa12.98□□□□□ -0.33
VPS28-216ENST00000533806 TMEM131Q92545 1883 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 NRDCO43847 1150 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 CLDN7O95471 211 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 SOD1P00441 154 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 PCCBP05166 539 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 ITGAVP06756 1048 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 C1SP09871 688 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 ATXN1LP0C7T5 689 aaKnown RBP12.97□□□□□ -0.33
VPS28-216ENST00000533806 PMLP29590 882 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 EPHB1P54762 984 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 KIAA1024LP59773 190 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 HNRNPKP61978 463 aaKnown RBP eCLIP12.97□□□□□ -0.335e-6■□□□□ 11.2
VPS28-216ENST00000533806 SIM1P81133 766 aaPredicted RBP12.97□□□□□ -0.33
VPS28-216ENST00000533806 PTK2BQ14289 1009 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 NFATC4Q14934 902 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 CCDC181Q5TID7 509 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 KCTD16Q68DU8 428 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 NYAP1Q6ZVC0 841 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 ZNF765Q7L2R6 523 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 CDKL3Q8IVW4 592 aaPredicted RBP12.97□□□□□ -0.33
VPS28-216ENST00000533806 REXO1L1PQ8IX06 675 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 TRIM58Q8NG06 486 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 NUS1Q96E22 293 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 MRGPRX2Q96LB1 330 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 TBATAQ96M53 351 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 CDC6Q99741 560 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 LGR4Q9BXB1 951 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 TEX101Q9BY14 249 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 ABCG8Q9H221 673 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 CARD9Q9H257 536 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 MAGEE1Q9HCI5 957 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 DNAJC28Q9NX36 388 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 UBP1Q9NZI7 540 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 KLHL8Q9P2G9 620 aaPredicted RBP12.97□□□□□ -0.33
VPS28-216ENST00000533806 FAM153AQ9UHL3 310 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 ANKRD36A6QL64 1941 aa12.97□□□□□ -0.33
VPS28-216ENST00000533806 LRRK1Q38SD2 2015 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 C5orf60A6NFR6 353 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 TMEM202A6NGA9 273 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 GOLGA8CPA6NN73 597 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 TRIM38O00635 465 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 SDC3O75056 442 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 PMPCBO75439 489 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 NDST3O95803 873 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 THOP1P52888 689 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 WNT3AP56704 352 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ARHGEF7Q14155 803 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 GALNT3Q14435 633 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 RPS6KA1Q15418 735 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 SIX1Q15475 284 aaPredicted RBP12.96□□□□□ -0.33
VPS28-216ENST00000533806 ALG11Q2TAA5 492 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ANKRD20A2Q5SQ80 823 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ANKRD20A1Q5TYW2 823 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ANKRD20A3Q5VUR7 823 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 DARS2Q6PI48 645 aaKnown RBP12.96□□□□□ -0.33
VPS28-216ENST00000533806 KDELC2Q7Z4H8 507 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 TMC3Q7Z5M5 1100 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 SLCO6A1Q86UG4 719 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 SLC13A5Q86YT5 568 aaPredicted RBP12.96□□□□□ -0.33
VPS28-216ENST00000533806 EID2Q8N6I1 236 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 ZNF548Q8NEK5 533 aaPredicted RBP12.96□□□□□ -0.33
VPS28-216ENST00000533806 GBA3Q9H227 469 aa12.96□□□□□ -0.33
VPS28-216ENST00000533806 TCEAL2Q9H3H9 227 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms