RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 DR1Q01658 176 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 KIAA0895LQ68EN5 471 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 NEK5Q6P3R8 708 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 USP45Q70EL2 814 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 LINC00523Q86TU6 105 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 CTAGE6Q86UF2 777 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 CTAGE4Q8IX94 777 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 ECHDC3Q96DC8 303 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 TDRD1Q9BXT4 1180 aaKnown RBP20.24■□□□□ 0.83
USP53-208ENST00000514305 DDX47Q9H0S4 455 aaKnown RBP20.24■□□□□ 0.83
USP53-208ENST00000514305 LRRC40Q9H9A6 602 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 ANKRD6Q9Y2G4 727 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 PDE2AO00408 941 aaPredicted RBP20.23■□□□□ 0.83
USP53-208ENST00000514305 TRAFD1O14545 582 aaPredicted RBP20.23■□□□□ 0.83
USP53-208ENST00000514305 AP1G1O43747 822 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 CBFA2T3O75081 653 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 PMPCBO75439 489 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 ADRB3P13945 408 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 CNTN1Q12860 1018 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 UGP2Q16851 508 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 KIF19Q2TAC6 998 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 POM121L1PQ3SYA9 428 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 NAPEPLDQ6IQ20 393 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 TTC27Q6P3X3 843 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 PCGF5Q86SE9 256 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 GLRX5Q86SX6 157 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 PRPF39Q86UA1 669 aaKnown RBP20.23■□□□□ 0.83
USP53-208ENST00000514305 OR14C36Q8NHC7 312 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 ADAMTS14Q8WXS8 1223 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 ARRDC3Q96B67 414 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 TADA1Q96BN2 335 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 FEM1CQ96JP0 617 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 CDC6Q99741 560 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 NEUROG2Q9H2A3 272 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 PREBQ9HCU5 417 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 RAB6BQ9NRW1 208 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 SNX11Q9Y5W9 270 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 SLCO1B1Q9Y6L6 691 aa20.23■□□□□ 0.83
USP53-208ENST00000514305 CFAP47Q6ZTR5 3102 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 ZFHX4Q86UP3 3567 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 TTC24A2A3L6 582 aaPredicted RBP20.22■□□□□ 0.83
USP53-208ENST00000514305 FAM221BA6H8Z2 402 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 FAM187AA6NFU0 413 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 TSPAN6O43657 245 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 MT-CYBP00156 380 aaPredicted RBP20.22■□□□□ 0.83
USP53-208ENST00000514305 MMP2P08253 660 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 HLA-DPA1P20036 260 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 RPL22P35268 128 aaKnown RBP20.22■□□□□ 0.83
USP53-208ENST00000514305 DRD3P35462 400 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 WNT3AP56704 352 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 CDK16Q00536 496 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 TRAF2Q12933 501 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 PCSK7Q16549 785 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 PARS2Q7L3T8 475 aaKnown RBP20.22■□□□□ 0.83
USP53-208ENST00000514305 AADATQ8N5Z0 425 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 PNPLA1Q8N8W4 532 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 SPATA22Q8NHS9 363 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 RHBDD1Q8TEB9 315 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 SKA1Q96BD8 255 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 KRT12Q99456 494 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 MLPHQ9BV36 600 aaPredicted RBP20.22■□□□□ 0.83
USP53-208ENST00000514305 UBP1Q9NZI7 540 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 CHKBQ9Y259 395 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 IGF2RP11717 2491 aa20.22■□□□□ 0.83
USP53-208ENST00000514305 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3DA0A087WVF3 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3IA0A087WXS9 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3EA0A087X179 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3KA0A087X1G2 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3FA6NER0 549 aaPredicted RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3LB9A6J9 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 PLRG1O43660 514 aaKnown RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 FZD6O60353 706 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 NDST3O95803 873 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3HP0C7X1 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TIMP2P16035 220 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 CCT8P50990 548 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 C21orf59P57076 290 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 RACK1P63244 317 aaKnown RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 BASP1P80723 227 aaKnown RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3GQ6DHY5 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3CQ6IPX1 549 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 TBC1D3Q8IZP1 549 aaPredicted RBP20.21■□□□□ 0.83
USP53-208ENST00000514305 IPMKQ8NFU5 416 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 OR2T34Q8NGX1 318 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 FAM131CQ96AQ9 280 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 ETNK1Q9HBU6 452 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 KCTD5Q9NXV2 234 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 SERGEFQ9UGK8 458 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 ASIC3Q9UHC3 531 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 PPIL1Q9Y3C6 166 aa20.21■□□□□ 0.83
USP53-208ENST00000514305 WDFY3Q8IZQ1 3526 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 ANKRD66B4E2M5 251 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 SMAPO00193 183 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 DFNA5O60443 496 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 FGF1P05230 155 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 IGHV4-34P06331 123 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 NUDT1P36639 197 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 ADCY8P40145 1251 aa20.2■□□□□ 0.82
USP53-208ENST00000514305 GPS1Q13098 491 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms