RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MTSS1LQ765P7 747 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 C17orf53Q8N3J3 647 aaPredicted RBP4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR14L1PQ8NHC6 308 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 HMCESQ96FZ2 354 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 NDST4Q9H3R1 872 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 MKKSQ9NPJ1 570 aaPredicted RBP4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 TMEM5Q9Y2B1 443 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 TTLL3Q9Y4R7 772 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 SQORQ9Y6N5 450 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 STON1Q9Y6Q2 735 aa4.15□□□□□ -1.75
HMGB1P28-201ENST00000507778 COL3A1P02461 1466 aaPredicted RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 A0A1B0GVM2 712 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 OVOL3O00110 214 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 TNFRSF13BO14836 293 aaPredicted RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 GJB3O75712 270 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SOX30O94993 753 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 VNN2O95498 520 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RB1P06400 928 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 HOXB2P14652 356 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 KCNJ4P48050 445 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RFX2P48378 723 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 METAP2P50579 478 aaKnown RBP eCLIP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF81P51508 661 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 CLCN3P51790 818 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 NUDT6P53370 316 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RAD23BP54727 409 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 GALCP54803 685 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SNX16P57768 344 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZBED6P86452 979 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 TFAP4Q01664 338 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ROR2Q01974 943 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 CTTNQ14247 550 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 IRF3Q14653 427 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 MMEL1Q495T6 779 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SOWAHCQ53LP3 525 aaPredicted RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 GGNBP1Q5YKI7 109 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ANKRD54Q6NXT1 300 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 METTL2BQ6P1Q9 378 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SHFQ7M4L6 423 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RNF168Q8IYW5 571 aaPredicted RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 METTL2AQ96IZ6 378 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 FEM1CQ96JP0 617 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 PPP1R13BQ96KQ4 1090 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF778Q96MU6 729 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SEPT5Q99719 369 aaPredicted RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RBM38Q9H0Z9 239 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 SLC28A3Q9HAS3 691 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 HINT3Q9NQE9 182 aaKnown RBP4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 FBXL17Q9UF56 701 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 RCOR1Q9UKL0 485 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF521Q96K83 1311 aa4.14□□□□□ -1.75
HMGB1P28-201ENST00000507778 A0A1B0GVT2 93 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 A0A1W2PQ09 198 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR6C75A6NL08 312 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 B4DGG1 531 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 B4DLN1 442 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 J3KR12 359 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 WNT9BO14905 357 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 RGS14O43566 566 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 HS6ST1O60243 411 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 JRKO75564 520 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 STARD3NLO95772 234 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 CYC1P08574 325 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 DDX5P17844 614 aaKnown RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 GABRB1P18505 474 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 GCH1P30793 250 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 HOXD3P31249 432 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 HOXA13P31271 388 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACSL1P33121 698 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 RAD52P43351 418 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 CAMPP49913 170 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 NUCB1Q02818 461 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 GPS2Q13227 327 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 HNF4GQ14541 408 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ASTE1Q2TB18 679 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 LEXMQ3ZCV2 418 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 CDONQ4KMG0 1287 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 RAB41Q5JT25 222 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 SIGIRRQ6IA17 410 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 KIAA0930Q6ICG6 404 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF425Q6IV72 752 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 PQLC2Q6ZP29 291 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 SEPT14Q6ZU15 432 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ENOSF1Q7L5Y1 443 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 IRF2BP2Q7Z5L9 587 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF575Q86XF7 245 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 SPATA6LQ8N4H0 392 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 AADATQ8N5Z0 425 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 IGSF8Q969P0 613 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 JAKMIP2Q96AA8 810 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 RRNAD1Q96FB5 475 aaKnown RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 CCDC34Q96HJ3 373 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 LRFN5Q96NI6 719 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 PCGF1Q9BSM1 259 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 FAM234AQ9H0X4 552 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 ESRP2Q9H6T0 727 aaKnown RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 HIF1ANQ9NWT6 349 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 CLIC5Q9NZA1 410 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 SUCLA2Q9P2R7 463 aaPredicted RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 FZD10Q9ULW2 581 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms