RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 FAM193AP78312 1265 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 BASP1P80723 227 aaKnown RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 DR1Q01658 176 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 RPL6Q02878 288 aaKnown RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 CREB5Q02930 508 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 ELP6Q0PNE2 266 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 GPS1Q13098 491 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 GALNT3Q14435 633 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 ELF2Q15723 593 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 KCTD19Q17RG1 926 aaPredicted RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 USP45Q70EL2 814 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 ZNF572Q7Z3I7 529 aaPredicted RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 MNS1Q8NEH6 495 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 OR2T34Q8NGX1 318 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 CCHCR1Q8TD31 782 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 PIH1D2Q8WWB5 315 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 SPOCK2Q92563 424 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 SLCO2A1Q92959 643 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 MRGPRX2Q96LB1 330 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 TRIB3Q96RU7 358 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 FICDQ9BVA6 458 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 GPR174Q9BXC1 333 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 KDM4CQ9H3R0 1056 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 PREBQ9HCU5 417 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 MBD1Q9UIS9 605 aaPredicted RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 RPL26L1Q9UNX3 145 aaKnown RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 ITM2BQ9Y287 266 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 FADS3Q9Y5Q0 445 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 COL12A1Q99715 3063 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PLXND1Q9Y4D7 1925 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3DA0A087WVF3 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3IA0A087WXS9 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3EA0A087X179 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3KA0A087X1G2 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 A0A0J9YYE9 177 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3FA6NER0 549 aaPredicted RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 ERI2A8K979 691 aaKnown RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3LB9A6J9 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 RIOK3O14730 519 aaKnown RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 AREL1O15033 823 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PSMD3O43242 534 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 AP2A1O95782 977 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PRLP01236 227 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 EPOP01588 193 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TRBC1P01850 177 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3HP0C7X1 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 CYP2A6P11509 494 aaPredicted RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 ITIH2P19823 946 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 HLA-DPA1P20036 260 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PTGIRP43119 386 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TERF1P54274 439 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 SEMG2Q02383 582 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 SEMA5AQ13591 1074 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PTK6Q13882 451 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 DHX34Q14147 1143 aaKnown RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 SPARCL1Q14515 664 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 QPCTQ16769 361 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 SYCP2LQ5T4T6 812 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3GQ6DHY5 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3CQ6IPX1 549 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 SYDE1Q6ZW31 735 aaPredicted RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 JAMLQ86YT9 394 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 KLHDC8BQ8IXV7 354 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBC1D3Q8IZP1 549 aaPredicted RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 SLC25A41Q8N5S1 370 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 PDCD7Q8N8D1 485 aaKnown RBP10.06□□□□□ -0.8
NUP54-203ENST00000504173 CEP112Q8N8E3 955 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 MDM1Q8TC05 714 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 CXorf40AQ8TE69 158 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 CRELD1Q96HD1 420 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 TBL1YQ9BQ87 522 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 APOL2Q9BQE5 337 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 LRRC40Q9H9A6 602 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 B4GALT6Q9UBX8 382 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 ASIC3Q9UHC3 531 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 GGT7Q9UJ14 662 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 NEU2Q9Y3R4 380 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 NUMA1Q14980 2115 aa10.06□□□□□ -0.8
NUP54-203ENST00000504173 UBR5O95071 2799 aaPredicted RBP10.05□□□□□ -0.8
NUP54-203ENST00000504173 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.05□□□□□ -0.8
NUP54-203ENST00000504173 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 LOC285095A0A1B0GVY8 99 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 CTAGE15A4D2H0 777 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 NPIPB15A6NHN6 443 aaPredicted RBP10.05□□□□□ -0.8
NUP54-203ENST00000504173 A8MX80 341 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 ANKRD66B4E2M5 251 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 TTI1O43156 1089 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 SPINT1O43278 529 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 TSPAN6O43657 245 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 RNGTTO60942 597 aaKnown RBP10.05□□□□□ -0.8
NUP54-203ENST00000504173 USP12O75317 370 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 FSBPO95073 299 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 AGTP01019 485 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 FGF1P05230 155 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 APRTP07741 180 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 ALPIP09923 528 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 ATXN1LP0C7T5 689 aaKnown RBP10.05□□□□□ -0.8
NUP54-203ENST00000504173 CTAGE8P0CG41 777 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 VIPR1P32241 457 aa10.05□□□□□ -0.8
NUP54-203ENST00000504173 ADRA1AP35348 466 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms