RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, human

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP54-217	ENST00000498213	CHRM3	P20309	590 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	RPS6KB1	P23443	525 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PDIA3	P30101	505 aa	Known RBP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ELF1	P32519	619 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	HNF1B	P35680	557 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	NAMPT	P43490	491 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	TRAPPC10	P48553	1259 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ANAPC15	P60006	121 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	DSC2	Q02487	901 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ZNF33A	Q06730	810 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	FCHO2	Q0JRZ9	810 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	GRIK2	Q13002	908 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PTPRR	Q15256	657 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PSMD5	Q16401	504 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PGS1	Q32NB8	556 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ITPRIPL2	Q3MIP1	535 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	FBXO43	Q4G163	708 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	XKR4	Q5GH76	650 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	CYP4A22	Q5TCH4	519 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	USP45	Q70EL2	814 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	RUFY3	Q7L099	469 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	HAUS6	Q7Z4H7	955 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ARID3B	Q8IVW6	561 aa	Predicted RBP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	APPL2	Q8NEU8	664 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	ERMN	Q8TAM6	284 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	LNX1	Q8TBB1	728 aa	Predicted RBP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	HASPIN	Q8TF76	798 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	KCNE4	Q8WWG9	221 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	KIFAP3	Q92845	792 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	MOCOS	Q96EN8	888 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	HSPBAP1	Q96EW2	488 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	CNOT6L	Q96LI5	555 aa	Known RBP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	VKORC1	Q9BQB6	163 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	LXN	Q9BS40	222 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	RAB34	Q9BZG1	259 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	GAREM1	Q9H706	876 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PLEKHA5	Q9HAU0	1116 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	AASDHPPT	Q9NRN7	309 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	TM7SF3	Q9NS93	570 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	MTRR	Q9UBK8	725 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PCDHA12	Q9UN75	941 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
USP54-217	ENST00000498213	WDR81	Q562E7	1941 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	SVIL	O95425	2214 aa		4.17	□□□□□ -1.74
USP54-217	ENST00000498213	PI4KA	P42356	2102 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	CELSR1	Q9NYQ6	3014 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ANKRD62	A6NC57	917 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	OR6C75	A6NL08	312 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213		K7ENP7	123 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	LAD1	O00515	517 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	TRDMT1	O14717	391 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ABLIM3	O94929	683 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	KIF20A	O95235	890 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	CDK4	P11802	303 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	KCNE1	P15382	129 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ARF4	P18085	180 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	RXRA	P19793	462 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	CYP3A5	P20815	502 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	CD6	P30203	668 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	HOXD12	P35452	270 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	MLH1	P40692	756 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	PDE6C	P51160	858 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	MBTD1	Q05BQ5	628 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	HABP2	Q14520	560 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ARHGAP29	Q52LW3	1261 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	XKR9	Q5GH70	373 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	PLAC9	Q5JTB6	97 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	SPDYC	Q5MJ68	293 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ZNF362	Q5T0B9	420 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	STXBP5	Q5T5C0	1151 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	HES3	Q5TGS1	186 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	FAM171A1	Q5VUB5	890 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	LMBRD2	Q68DH5	695 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	KIAA0895L	Q68EN5	471 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	INO80C	Q6PI98	192 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	RABEPK	Q7Z6M1	372 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ITIH5	Q86UX2	942 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	SKAP1	Q86WV1	359 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	CD302	Q8IX05	232 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	DHX40	Q8IX18	779 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	TRIML1	Q8N9V2	468 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	BEST2	Q8NFU1	509 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	OLIG1	Q8TAK6	271 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	BRIX1	Q8TDN6	353 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	C2orf15	Q8WU43	125 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	SNRNP27	Q8WVK2	155 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	FKBP10	Q96AY3	582 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	MTFMT	Q96DP5	389 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	HAPLN3	Q96S86	360 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	P2RY13	Q9BPV8	354 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	NTPCR	Q9BSD7	190 aa	Known RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	POLR3C	Q9BUI4	534 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ALG8	Q9BVK2	526 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	SLC26A6	Q9BXS9	759 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ACTRT3	Q9BYD9	372 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	GKN1	Q9NS71	199 aa		4.16	□□□□□ -1.74
USP54-217	ENST00000498213	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.16	□□□□□ -1.74
USP54-217	ENST00000498213	KLC4	Q9NSK0	619 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms