RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NUF2Q9BZD4 464 aa3.01□□□□□ -1.93
CPSF3-205ENST00000489629 TAAR2Q9P1P5 351 aa3.01□□□□□ -1.93
CPSF3-205ENST00000489629 RCOR1Q9UKL0 485 aa3.01□□□□□ -1.93
CPSF3-205ENST00000489629 MMP24Q9Y5R2 645 aa3.01□□□□□ -1.93
CPSF3-205ENST00000489629 GOLGA6L9A6NEM1 432 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 TEX22C9J3V5 150 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 AKR1B15C9JRZ8 316 aaPredicted RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 TAF4O00268 1085 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 CAPN9O14815 690 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 IRAK2O43187 625 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 G6PDP11413 515 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 ITGA2P17301 1181 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 MAOAP21397 527 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 SHMT1P34896 483 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 DDIT3P35638 169 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 IL15P40933 162 aaPredicted RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 TMPOP42166 694 aaKnown RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 FMO5P49326 533 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 CLCNKAP51800 687 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 NR0B1P51843 470 aaKnown RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 ERVK11-1P61568 191 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 CTF1Q16619 201 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 C2orf68Q2NKX9 166 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 EIF2S3LQ2VIR3 472 aaKnown RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 KRT71Q3SY84 523 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 MAP3K21Q5TCX8 1036 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 IRAK1BP1Q5VVH5 260 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 TRNP1Q6NT89 227 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 DHX40Q8IX18 779 aaKnown RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 SLC35F3Q8IY50 421 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 SLC24A4Q8NFF2 622 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 BEST2Q8NFU1 509 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 TNIP2Q8NFZ5 429 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 CTCFLQ8NI51 663 aaPredicted RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 DUSP19Q8WTR2 217 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 CDCA5Q96FF9 252 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 SIN3AQ96ST3 1273 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 MAGEE1Q9HCI5 957 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 MMP25Q9NPA2 562 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 DDX43Q9NXZ2 648 aaKnown RBP3□□□□□ -1.93
CPSF3-205ENST00000489629 IL1RAPL1Q9NZN1 696 aa3□□□□□ -1.93
CPSF3-205ENST00000489629 MT-CYBP00156 380 aaPredicted RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 URODP06132 367 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 DDX5P17844 614 aaKnown RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 USP8P40818 1118 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 GPD2P43304 727 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 TRAPPC10P48553 1259 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 TAF6P49848 677 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 HNRNPH2P55795 449 aaKnown RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 EFNB1P98172 346 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 SLC12A1Q13621 1099 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 TMEM30BQ3MIR4 351 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 STXBP5Q5T5C0 1151 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 ARHGAP17Q68EM7 881 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 RGMBQ6NW40 437 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 FBXO46Q6PJ61 603 aaPredicted RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 SLC36A4Q6YBV0 504 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 NKAPQ8N5F7 415 aaKnown RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 METTL27Q8N6F8 245 aaPredicted RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 C11orf65Q8NCR3 313 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 OR2AK2Q8NG84 335 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 FAM76AQ8TAV0 307 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 RBM4Q9BWF3 364 aaKnown RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 EGLN1Q9GZT9 426 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 HSPB7Q9UBY9 170 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 PADI1Q9ULC6 663 aa2.99□□□□□ -1.93
CPSF3-205ENST00000489629 LSM4Q9Y4Z0 139 aaKnown RBP2.99□□□□□ -1.93
CPSF3-205ENST00000489629 TMEM202A6NGA9 273 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 IFNL4K9M1U5 179 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 BCAT2O15382 392 aaPredicted RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 GALTP07902 379 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 MYOD1P15172 320 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 PAX1P15863 534 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 CORO1AP31146 461 aaKnown RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 METAP2P50579 478 aaKnown RBP eCLIP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 VEPH1Q14D04 833 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 TCTN1Q2MV58 587 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 ZNF766Q5HY98 468 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 C10orf62Q5T681 223 aaPredicted RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 TXNDC8Q6A555 127 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 TMEM81Q6P7N7 255 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 DGLUCYQ7Z3D6 616 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 RNF113BQ8IZP6 322 aaKnown RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 DSELQ8IZU8 1212 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 ZCCHC9Q8N567 271 aaKnown RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 KLHDC9Q8NEP7 349 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 GRAPLQ8TC17 118 aaPredicted RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 F2RL3Q96RI0 385 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 LITAFQ99732 161 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 SH3GL2Q99962 352 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 LBHD1Q9BQE6 289 aaPredicted RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 PYM1Q9BRP8 204 aaKnown RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 LRRC1Q9BTT6 524 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 HCFC1R1Q9NWW0 138 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 FBXO9Q9UK97 447 aaPredicted RBP2.98□□□□□ -1.93
CPSF3-205ENST00000489629 AMDHD2Q9Y303 409 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 PCDHGB3Q9Y5G1 929 aa2.98□□□□□ -1.93
CPSF3-205ENST00000489629 A0A1B0GU03 582 aa2.97□□□□□ -1.93
CPSF3-205ENST00000489629 CTAGE9A4FU28 777 aa2.97□□□□□ -1.93
CPSF3-205ENST00000489629 PMS2P5A8MQ11 134 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms