RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 TTC24A2A3L6 582 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 PDE2AO00408 941 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 NVLO15381 856 aaKnown RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 HTRA2O43464 458 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 CPP00450 1065 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 FTLP02792 175 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 LIPCP11150 499 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 GZMAP12544 262 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 ITIH1P19827 911 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 HSPA9P38646 679 aaKnown RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 ARHGEF7Q14155 803 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 DPYSL2Q16555 572 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 ZNF571Q7Z3V5 609 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 HEATR4Q86WZ0 1026 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 SLITRK4Q8IW52 837 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 TMEM159Q96B96 161 aa18.44■□□□□ 0.54
HDAC6-231ENST00000488905 CARS2Q9HA77 564 aaKnown RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 RTN4Q9NQC3 1192 aaKnown RBP18.44■□□□□ 0.54
HDAC6-231ENST00000488905 B8ZZF3 427 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 H3BRJ5 948 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 EFSO43281 561 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 CCNB1P14635 433 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 CR2P20023 1033 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 VIPR1P32241 457 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 PCK1P35558 622 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 TYRO3Q06418 890 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 TGIF1Q15583 401 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 SMTNL2Q2TAL5 461 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 MAP9Q49MG5 647 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 CCDC183Q5T5S1 534 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 TMPRSS9Q7Z410 1059 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 PDCD6IPQ8WUM4 868 aaKnown RBP18.43■□□□□ 0.54
HDAC6-231ENST00000488905 DTD2Q96FN9 168 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 NUDCD1Q96RS6 583 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 CMKLR1Q99788 373 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 MGME1Q9BQP7 344 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 SUDS3Q9H7L9 328 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-231ENST00000488905 PHPT1Q9NRX4 125 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-231ENST00000488905 KCTD5Q9NXV2 234 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 PCDHGC4Q9Y5F7 938 aa18.43■□□□□ 0.54
HDAC6-231ENST00000488905 PRAMEF33A0A0G2JMD5 474 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 AGRPO00253 132 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 DDX3XO00571 662 aaKnown RBP eCLIP18.42■□□□□ 0.541e-8■■■■□ 23.1
HDAC6-231ENST00000488905 PRAMEF10O60809 474 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 HEXIM1O94992 359 aaKnown RBP18.42■□□□□ 0.54
HDAC6-231ENST00000488905 PEX11BO96011 259 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 LHCGRP22888 699 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 NFKBIAP25963 317 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 IL1R2P27930 398 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 ARL4AP40617 200 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 ETV5P41161 510 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 PRKCIP41743 596 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 MAZP56270 477 aaKnown RBP18.42■□□□□ 0.54
HDAC6-231ENST00000488905 SRSF6Q13247 344 aaKnown RBP18.42■□□□□ 0.54
HDAC6-231ENST00000488905 PHF19Q5T6S3 580 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 TMCO3Q6UWJ1 677 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 PGBD5Q8N414 524 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 GPBAR1Q8TDU6 330 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 TRIM11Q96F44 468 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 TEX101Q9BY14 249 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 GSDMCQ9BYG8 508 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 MRPL47Q9HD33 250 aaKnown RBP18.42■□□□□ 0.54
HDAC6-231ENST00000488905 ETNK2Q9NVF9 386 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 AIPL1Q9NZN9 384 aa18.42■□□□□ 0.54
HDAC6-231ENST00000488905 GOLGA6L22H0YM25 854 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 CEACAM5P06731 702 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 MYBL1P10243 752 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 TCF4P15884 667 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 ETV3P41162 512 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 CDK3Q00526 305 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 B4GALNT1Q00973 533 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 ILF3Q12906 894 aaKnown RBP eCLIP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 TRAF2Q12933 501 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 NR1D2Q14995 579 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 DENND2CQ68D51 928 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 ZNF438Q7Z4V0 828 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 POLNQ7Z5Q5 900 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 C17orf82Q86X59 251 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 NRROSQ86YC3 692 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 BBS5Q8N3I7 341 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 ATPAF2Q8N5M1 289 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 ZDHHC1Q8WTX9 485 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 HSPH1Q92598 858 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 SGF29Q96ES7 293 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 CSPG4P5Q96PW8 444 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 FRMD8Q9BZ67 464 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 NAT10Q9H0A0 1025 aaKnown RBP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 NOD2Q9HC29 1040 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 SPATS2LQ9NUQ6 558 aaKnown RBP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 TRNAU1APQ9NX07 287 aaKnown RBP18.41■□□□□ 0.54
HDAC6-231ENST00000488905 FOXJ2Q9P0K8 574 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 MYO1AQ9UBC5 1043 aa18.41■□□□□ 0.54
HDAC6-231ENST00000488905 NPIPB15A6NHN6 443 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-231ENST00000488905 PSMD11O00231 422 aa18.4■□□□□ 0.54
HDAC6-231ENST00000488905 MAFKO60675 156 aa18.4■□□□□ 0.54
HDAC6-231ENST00000488905 CPNE6O95741 557 aa18.4■□□□□ 0.54
HDAC6-231ENST00000488905 MBD3O95983 291 aa18.4■□□□□ 0.54
HDAC6-231ENST00000488905 CYP2A6P11509 494 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-231ENST00000488905 AMPD1P23109 780 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms